miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11697 5' -53.7 NC_003102.1 + 18504 0.66 0.962813
Target:  5'- cGAUGUUCGCGCCaAUC-UG-CCGgauguaacCGAa -3'
miRNA:   3'- -CUGCAAGCGCGG-UAGuACaGGCa-------GCU- -5'
11697 5' -53.7 NC_003102.1 + 70734 0.66 0.951427
Target:  5'- aACGaagCGCGCCAgc-UGaCCGUCGAc -3'
miRNA:   3'- cUGCaa-GCGCGGUaguACaGGCAGCU- -5'
11697 5' -53.7 NC_003102.1 + 34794 0.67 0.94266
Target:  5'- aACGUUUGCGCCu---UGaUCGUCGAc -3'
miRNA:   3'- cUGCAAGCGCGGuaguACaGGCAGCU- -5'
11697 5' -53.7 NC_003102.1 + 97176 0.68 0.916482
Target:  5'- uACGg--GCGCuCAUagaucuucgCAUGUCCGUCGAg -3'
miRNA:   3'- cUGCaagCGCG-GUA---------GUACAGGCAGCU- -5'
11697 5' -53.7 NC_003102.1 + 103082 0.68 0.904297
Target:  5'- cGACGUuugggUCGCGUCcgcgGUCAUGUCCa-CGAu -3'
miRNA:   3'- -CUGCA-----AGCGCGG----UAGUACAGGcaGCU- -5'
11697 5' -53.7 NC_003102.1 + 80084 0.69 0.862089
Target:  5'- uGACauggUCGaCGCCAUCGUG-CCGUCc- -3'
miRNA:   3'- -CUGca--AGC-GCGGUAGUACaGGCAGcu -5'
11697 5' -53.7 NC_003102.1 + 88907 0.7 0.845443
Target:  5'- gGACGgugUCGUguccgaaGCCGUCGgcgCCGUCGAa -3'
miRNA:   3'- -CUGCa--AGCG-------CGGUAGUacaGGCAGCU- -5'
11697 5' -53.7 NC_003102.1 + 78565 0.7 0.838037
Target:  5'- cGCGaUCGCacGCCGUCAuUGUCUGUCa- -3'
miRNA:   3'- cUGCaAGCG--CGGUAGU-ACAGGCAGcu -5'
11697 5' -53.7 NC_003102.1 + 114075 0.7 0.838037
Target:  5'- cGACGUgcUUGCGuCCAUUcgGUCCGUa-- -3'
miRNA:   3'- -CUGCA--AGCGC-GGUAGuaCAGGCAgcu -5'
11697 5' -53.7 NC_003102.1 + 113425 0.71 0.775571
Target:  5'- cGACaGUUCGaUGCCAUCAUuccuaugaaaaGUCCGUCu- -3'
miRNA:   3'- -CUG-CAAGC-GCGGUAGUA-----------CAGGCAGcu -5'
11697 5' -53.7 NC_003102.1 + 39210 0.75 0.55216
Target:  5'- cGACGUUUGCGUCGUCuGUGUucaccgaaUCGUCGAu -3'
miRNA:   3'- -CUGCAAGCGCGGUAG-UACA--------GGCAGCU- -5'
11697 5' -53.7 NC_003102.1 + 85921 1.1 0.00434
Target:  5'- cGACGUUCGCGCCAUCAUGUCCGUCGAa -3'
miRNA:   3'- -CUGCAAGCGCGGUAGUACAGGCAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.