miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11698 3' -53.1 NC_003102.1 + 87971 0.66 0.964511
Target:  5'- cGCCUGAGCUuCGGCGUCUu------- -3'
miRNA:   3'- -CGGGCUCGAcGCUGCAGAcauuacug -5'
11698 3' -53.1 NC_003102.1 + 37879 0.66 0.957291
Target:  5'- cUUCGGGCgGCGGCGgcggCggcgGUGAUGAUg -3'
miRNA:   3'- cGGGCUCGaCGCUGCa---Ga---CAUUACUG- -5'
11698 3' -53.1 NC_003102.1 + 39549 0.67 0.935045
Target:  5'- cUCCGA-CUGCGACGUCUcGU-AUGGa -3'
miRNA:   3'- cGGGCUcGACGCUGCAGA-CAuUACUg -5'
11698 3' -53.1 NC_003102.1 + 790 0.67 0.949127
Target:  5'- cGCCUGAGCUGUGAaauuuucuCGUCU----UGAUc -3'
miRNA:   3'- -CGGGCUCGACGCU--------GCAGAcauuACUG- -5'
11698 3' -53.1 NC_003102.1 + 49653 0.7 0.856485
Target:  5'- cGCCCGAucaacGCgacGCGGCGUUUGUAAa--- -3'
miRNA:   3'- -CGGGCU-----CGa--CGCUGCAGACAUUacug -5'
11698 3' -53.1 NC_003102.1 + 87845 1.12 0.003067
Target:  5'- cGCCCGAGCUGCGACGUCUGUAAUGACu -3'
miRNA:   3'- -CGGGCUCGACGCUGCAGACAUUACUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.