Results 1 - 18 of 18 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
11698 | 5' | -55.8 | NC_003102.1 | + | 71972 | 0.66 | 0.920322 |
Target: 5'- gCGACGCgCggagguaagaaACCGUUGCUGUUCGAa -3' miRNA: 3'- -GCUGCG-Gaaga-------UGGUAGCGGCGAGCU- -5' |
|||||||
11698 | 5' | -55.8 | NC_003102.1 | + | 18304 | 0.66 | 0.918061 |
Target: 5'- cCGACGCCgacgaacCUGCCGcCGUCGCg--- -3' miRNA: 3'- -GCUGCGGaa-----GAUGGUaGCGGCGagcu -5' |
|||||||
11698 | 5' | -55.8 | NC_003102.1 | + | 21059 | 0.66 | 0.912241 |
Target: 5'- aGACgGCCguccgaaaugCUGCCAcCGCCGCcccaagUCGAc -3' miRNA: 3'- gCUG-CGGaa--------GAUGGUaGCGGCG------AGCU- -5' |
|||||||
11698 | 5' | -55.8 | NC_003102.1 | + | 108646 | 0.66 | 0.899893 |
Target: 5'- uGGCGUCaUUCUgAUCGUCGCCGUU-GAc -3' miRNA: 3'- gCUGCGG-AAGA-UGGUAGCGGCGAgCU- -5' |
|||||||
11698 | 5' | -55.8 | NC_003102.1 | + | 53079 | 0.66 | 0.897312 |
Target: 5'- uGGCGCCgcucucgauuaugUCU-CUAaacUCGCCGCUCa- -3' miRNA: 3'- gCUGCGGa------------AGAuGGU---AGCGGCGAGcu -5' |
|||||||
11698 | 5' | -55.8 | NC_003102.1 | + | 134553 | 0.67 | 0.886618 |
Target: 5'- gCGGCGCCaaaUUCUugcgACCGcCGCCGC-CGc -3' miRNA: 3'- -GCUGCGG---AAGA----UGGUaGCGGCGaGCu -5' |
|||||||
11698 | 5' | -55.8 | NC_003102.1 | + | 48839 | 0.67 | 0.879642 |
Target: 5'- gGGCGUUUcgCcGCCGUCGCCGC-CGc -3' miRNA: 3'- gCUGCGGAa-GaUGGUAGCGGCGaGCu -5' |
|||||||
11698 | 5' | -55.8 | NC_003102.1 | + | 108700 | 0.67 | 0.879642 |
Target: 5'- uGGCGUCaUUCUgAUCGUCGCCGUUgGc -3' miRNA: 3'- gCUGCGG-AAGA-UGGUAGCGGCGAgCu -5' |
|||||||
11698 | 5' | -55.8 | NC_003102.1 | + | 41004 | 0.67 | 0.857413 |
Target: 5'- aCG-UGCCUUCUAUCGgucCGaCgGCUCGAc -3' miRNA: 3'- -GCuGCGGAAGAUGGUa--GC-GgCGAGCU- -5' |
|||||||
11698 | 5' | -55.8 | NC_003102.1 | + | 71755 | 0.67 | 0.857413 |
Target: 5'- cCGACGgCg---ACCA-CGCUGCUCGGc -3' miRNA: 3'- -GCUGCgGaagaUGGUaGCGGCGAGCU- -5' |
|||||||
11698 | 5' | -55.8 | NC_003102.1 | + | 32583 | 0.67 | 0.849588 |
Target: 5'- -cGCGUCUUCUucucaACCGUUGCCGCcCa- -3' miRNA: 3'- gcUGCGGAAGA-----UGGUAGCGGCGaGcu -5' |
|||||||
11698 | 5' | -55.8 | NC_003102.1 | + | 22687 | 0.68 | 0.841567 |
Target: 5'- uGGCGCCga-UGCCGaccgcuUCGaCCGCUCa- -3' miRNA: 3'- gCUGCGGaagAUGGU------AGC-GGCGAGcu -5' |
|||||||
11698 | 5' | -55.8 | NC_003102.1 | + | 60355 | 0.68 | 0.833354 |
Target: 5'- cCGcCGCCgccgCUGCCucuucuAUCGCCGCUUc- -3' miRNA: 3'- -GCuGCGGaa--GAUGG------UAGCGGCGAGcu -5' |
|||||||
11698 | 5' | -55.8 | NC_003102.1 | + | 46016 | 0.68 | 0.833354 |
Target: 5'- cCGcCGCCgccgCUGCCucuucuAUCGCCGCUUc- -3' miRNA: 3'- -GCuGCGGaa--GAUGG------UAGCGGCGAGcu -5' |
|||||||
11698 | 5' | -55.8 | NC_003102.1 | + | 87957 | 0.68 | 0.821552 |
Target: 5'- gCGACGCCUcCUGCCgccugagcuucggcGUCuuccuccGCUGCUUGAu -3' miRNA: 3'- -GCUGCGGAaGAUGG--------------UAG-------CGGCGAGCU- -5' |
|||||||
11698 | 5' | -55.8 | NC_003102.1 | + | 134972 | 0.75 | 0.435233 |
Target: 5'- aGugGCCagCUcgcacgauugcgaACCGUCGCCGCUCa- -3' miRNA: 3'- gCugCGGaaGA-------------UGGUAGCGGCGAGcu -5' |
|||||||
11698 | 5' | -55.8 | NC_003102.1 | + | 59352 | 0.81 | 0.194631 |
Target: 5'- uGcCGCCgUC-GCCGUCGCCGCUCGAa -3' miRNA: 3'- gCuGCGGaAGaUGGUAGCGGCGAGCU- -5' |
|||||||
11698 | 5' | -55.8 | NC_003102.1 | + | 87879 | 1.09 | 0.003154 |
Target: 5'- uCGACGCCUUCUACCAUCGCCGCUCGAu -3' miRNA: 3'- -GCUGCGGAAGAUGGUAGCGGCGAGCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home