miRNA display CGI


Results 81 - 100 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11699 3' -44.4 NC_003102.1 + 42761 0.75 0.976805
Target:  5'- uUGAACGcGUCUGACUUUUCGa----- -3'
miRNA:   3'- -ACUUGCaCAGGCUGAAAAGCauuuga -5'
11699 3' -44.4 NC_003102.1 + 36232 0.76 0.971076
Target:  5'- uUGAACGUGgCCGACUUUUCaUGuACa -3'
miRNA:   3'- -ACUUGCACaGGCUGAAAAGcAUuUGa -5'
11699 3' -44.4 NC_003102.1 + 112568 0.76 0.971076
Target:  5'- cGAACcUGgCCGACUUUUCGUuGACa -3'
miRNA:   3'- aCUUGcACaGGCUGAAAAGCAuUUGa -5'
11699 3' -44.4 NC_003102.1 + 104515 0.76 0.971076
Target:  5'- cGAACcUGgCCGACUUUUCGUuGACa -3'
miRNA:   3'- aCUUGcACaGGCUGAAAAGCAuUUGa -5'
11699 3' -44.4 NC_003102.1 + 103612 0.76 0.967859
Target:  5'- -uAACGUGUCUGACUUUUCGa----- -3'
miRNA:   3'- acUUGCACAGGCUGAAAAGCauuuga -5'
11699 3' -44.4 NC_003102.1 + 10575 0.76 0.964396
Target:  5'- cGAACcUGgCCGACUUUUCGUGAGg- -3'
miRNA:   3'- aCUUGcACaGGCUGAAAAGCAUUUga -5'
11699 3' -44.4 NC_003102.1 + 89257 0.78 0.92713
Target:  5'- uUGAACaUGUCUGACUUUUCaUAGACa -3'
miRNA:   3'- -ACUUGcACAGGCUGAAAAGcAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 67077 0.79 0.908562
Target:  5'- -aAACGUGUCUGACUUUUUGcAAACa -3'
miRNA:   3'- acUUGCACAGGCUGAAAAGCaUUUGa -5'
11699 3' -44.4 NC_003102.1 + 76351 0.79 0.894792
Target:  5'- cGAACcUGgCCGACUUUUCGUAAAUUu -3'
miRNA:   3'- aCUUGcACaGGCUGAAAAGCAUUUGA- -5'
11699 3' -44.4 NC_003102.1 + 54450 0.79 0.901815
Target:  5'- uUGAACGUGUCCGACUUUUg------- -3'
miRNA:   3'- -ACUUGCACAGGCUGAAAAgcauuuga -5'
11699 3' -44.4 NC_003102.1 + 132780 0.8 0.87212
Target:  5'- aUGAACcUGUuaGACUUUUCGUGAACa -3'
miRNA:   3'- -ACUUGcACAggCUGAAAAGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 132701 0.8 0.87212
Target:  5'- aUGAACcUGUuaGACUUUUCGUGAACa -3'
miRNA:   3'- -ACUUGcACAggCUGAAAAGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 26361 0.8 0.864047
Target:  5'- cGAACGUGgCCGACUUUUCGaGAAa- -3'
miRNA:   3'- aCUUGCACaGGCUGAAAAGCaUUUga -5'
11699 3' -44.4 NC_003102.1 + 132844 0.8 0.87212
Target:  5'- aUGAACaUGUuaGACUUUUCGUGAACa -3'
miRNA:   3'- -ACUUGcACAggCUGAAAAGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 42728 0.81 0.820149
Target:  5'- -cAACuUGUCUGACUUUUCGUGAACa -3'
miRNA:   3'- acUUGcACAGGCUGAAAAGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 61580 0.81 0.820149
Target:  5'- cGGACGUGUCCGAUcucugaacgUUUUCGUAGuCUg -3'
miRNA:   3'- aCUUGCACAGGCUG---------AAAAGCAUUuGA- -5'
11699 3' -44.4 NC_003102.1 + 89574 0.83 0.7294
Target:  5'- uUGAACGUGUCUGACUUUUCauguuuUAAACa -3'
miRNA:   3'- -ACUUGCACAGGCUGAAAAGc-----AUUUGa -5'
11699 3' -44.4 NC_003102.1 + 103730 0.84 0.718664
Target:  5'- -aAACGUGUCUGACUUUUCGcGGACa -3'
miRNA:   3'- acUUGCACAGGCUGAAAAGCaUUUGa -5'
11699 3' -44.4 NC_003102.1 + 112605 0.84 0.718664
Target:  5'- cGAACGUGUCCGACUUUUaGUuacgAAACg -3'
miRNA:   3'- aCUUGCACAGGCUGAAAAgCA----UUUGa -5'
11699 3' -44.4 NC_003102.1 + 121758 0.85 0.630599
Target:  5'- uUGAACGUGUuuGACUUUUCaUAAACg -3'
miRNA:   3'- -ACUUGCACAggCUGAAAAGcAUUUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.