miRNA display CGI


Results 61 - 80 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11699 3' -44.4 NC_003102.1 + 66980 0.88 0.521049
Target:  5'- -aAACGUGUCUGACUUUUCGUuAACUa -3'
miRNA:   3'- acUUGCACAGGCUGAAAAGCAuUUGA- -5'
11699 3' -44.4 NC_003102.1 + 67077 0.79 0.908562
Target:  5'- -aAACGUGUCUGACUUUUUGcAAACa -3'
miRNA:   3'- acUUGCACAGGCUGAAAAGCaUUUGa -5'
11699 3' -44.4 NC_003102.1 + 67174 0.88 0.510439
Target:  5'- cGAACGUGUCUGACUUUUUGcAAACa -3'
miRNA:   3'- aCUUGCACAGGCUGAAAAGCaUUUGa -5'
11699 3' -44.4 NC_003102.1 + 67211 0.66 0.999998
Target:  5'- cGAACcUGgCCGACUUUUCGa----- -3'
miRNA:   3'- aCUUGcACaGGCUGAAAAGCauuuga -5'
11699 3' -44.4 NC_003102.1 + 67264 0.88 0.510439
Target:  5'- cGAACGUGUCUGACUUUUUGcAAACa -3'
miRNA:   3'- aCUUGCACAGGCUGAAAAGCaUUUGa -5'
11699 3' -44.4 NC_003102.1 + 67309 0.75 0.979334
Target:  5'- cGAACcUGgCCGACUUUUCGaUAAGCg -3'
miRNA:   3'- aCUUGcACaGGCUGAAAAGC-AUUUGa -5'
11699 3' -44.4 NC_003102.1 + 67399 0.74 0.987446
Target:  5'- cGAACcUGgCCGACUUUUCGUAAu-- -3'
miRNA:   3'- aCUUGcACaGGCUGAAAAGCAUUuga -5'
11699 3' -44.4 NC_003102.1 + 74911 0.67 0.999993
Target:  5'- gGAACGgg-CCGAUUcgugCGUAGACUu -3'
miRNA:   3'- aCUUGCacaGGCUGAaaa-GCAUUUGA- -5'
11699 3' -44.4 NC_003102.1 + 76351 0.79 0.894792
Target:  5'- cGAACcUGgCCGACUUUUCGUAAAUUu -3'
miRNA:   3'- aCUUGcACaGGCUGAAAAGCAUUUGA- -5'
11699 3' -44.4 NC_003102.1 + 76478 0.73 0.995523
Target:  5'- cGAACcUGgCCGACUUUUCGUuGAUUg -3'
miRNA:   3'- aCUUGcACaGGCUGAAAAGCAuUUGA- -5'
11699 3' -44.4 NC_003102.1 + 76486 0.67 0.999995
Target:  5'- uUGAACGcGUCUGACUUUcuaCGUuauuGCg -3'
miRNA:   3'- -ACUUGCaCAGGCUGAAAa--GCAuu--UGa -5'
11699 3' -44.4 NC_003102.1 + 76613 0.85 0.641714
Target:  5'- uUGAACGUGgCCGACUUUUCaUAAACUu -3'
miRNA:   3'- -ACUUGCACaGGCUGAAAAGcAUUUGA- -5'
11699 3' -44.4 NC_003102.1 + 89257 0.78 0.92713
Target:  5'- uUGAACaUGUCUGACUUUUCaUAGACa -3'
miRNA:   3'- -ACUUGcACAGGCUGAAAAGcAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 89348 0.71 0.998472
Target:  5'- uUGAACGcGUCCaACUUUUUGUcAAACa -3'
miRNA:   3'- -ACUUGCaCAGGcUGAAAAGCA-UUUGa -5'
11699 3' -44.4 NC_003102.1 + 89438 1.09 0.039662
Target:  5'- uUGAACGUGUCCGACUUUUCGUAAACUu -3'
miRNA:   3'- -ACUUGCACAGGCUGAAAAGCAUUUGA- -5'
11699 3' -44.4 NC_003102.1 + 89499 0.69 0.99992
Target:  5'- uUGGACGcGUucaaaucaaacccggCCGACUUUUCGUGguuaAACa -3'
miRNA:   3'- -ACUUGCaCA---------------GGCUGAAAAGCAU----UUGa -5'
11699 3' -44.4 NC_003102.1 + 89506 0.86 0.619485
Target:  5'- uUGAACGUGgCUGACUUUUCGUAGAa- -3'
miRNA:   3'- -ACUUGCACaGGCUGAAAAGCAUUUga -5'
11699 3' -44.4 NC_003102.1 + 89574 0.83 0.7294
Target:  5'- uUGAACGUGUCUGACUUUUCauguuuUAAACa -3'
miRNA:   3'- -ACUUGCACAGGCUGAAAAGc-----AUUUGa -5'
11699 3' -44.4 NC_003102.1 + 89640 0.69 0.999882
Target:  5'- -aAACcUGUCUGACUUUUCGUGu--- -3'
miRNA:   3'- acUUGcACAGGCUGAAAAGCAUuuga -5'
11699 3' -44.4 NC_003102.1 + 97707 0.68 0.999933
Target:  5'- -cAACuUGUCUGACUUUUCaUAGACa -3'
miRNA:   3'- acUUGcACAGGCUGAAAAGcAUUUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.