miRNA display CGI


Results 101 - 120 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11699 3' -44.4 NC_003102.1 + 112702 1.02 0.098113
Target:  5'- cGAACGUGUCUGACUUUUCGUGGACg -3'
miRNA:   3'- aCUUGCACAGGCUGAAAAGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 112786 0.92 0.323136
Target:  5'- cGAACGUGUCUGACUUUuuauagUCGUGGACUa -3'
miRNA:   3'- aCUUGCACAGGCUGAAA------AGCAUUUGA- -5'
11699 3' -44.4 NC_003102.1 + 117849 0.67 0.999986
Target:  5'- aUGAuCGUGUCCGACUUgUCc------ -3'
miRNA:   3'- -ACUuGCACAGGCUGAAaAGcauuuga -5'
11699 3' -44.4 NC_003102.1 + 121214 0.66 0.999998
Target:  5'- cGGGCuuuGUGUCCGAU--UUCGUGcccAACa -3'
miRNA:   3'- aCUUG---CACAGGCUGaaAAGCAU---UUGa -5'
11699 3' -44.4 NC_003102.1 + 121680 0.93 0.307465
Target:  5'- cGAACGUGUCUGACUUUUCGUAGu-- -3'
miRNA:   3'- aCUUGCACAGGCUGAAAAGCAUUuga -5'
11699 3' -44.4 NC_003102.1 + 121758 0.85 0.630599
Target:  5'- uUGAACGUGUuuGACUUUUCaUAAACg -3'
miRNA:   3'- -ACUUGCACAggCUGAAAAGcAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 121814 0.67 0.99999
Target:  5'- cGAACcUGgCCGACUUUUCGaUAAGu- -3'
miRNA:   3'- aCUUGcACaGGCUGAAAAGC-AUUUga -5'
11699 3' -44.4 NC_003102.1 + 121894 0.72 0.997321
Target:  5'- cGAACcUGgCCGACUUUUCGUAc--- -3'
miRNA:   3'- aCUUGcACaGGCUGAAAAGCAUuuga -5'
11699 3' -44.4 NC_003102.1 + 121958 0.75 0.985698
Target:  5'- uUGAACGUGgCCGACUugUUUCGauuACUa -3'
miRNA:   3'- -ACUUGCACaGGCUGA--AAAGCauuUGA- -5'
11699 3' -44.4 NC_003102.1 + 132092 0.7 0.999579
Target:  5'- -aAACuUGUuaGACUUUUCGUGAACa -3'
miRNA:   3'- acUUGcACAggCUGAAAAGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 132122 0.67 0.99999
Target:  5'- aUGAACuUGUuaGACUUUUCaUGAACa -3'
miRNA:   3'- -ACUUGcACAggCUGAAAAGcAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 132206 0.73 0.994741
Target:  5'- aUGAACuUGUUgGACUuacuUUUCGUGAACa -3'
miRNA:   3'- -ACUUGcACAGgCUGA----AAAGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 132242 0.67 0.99999
Target:  5'- aUGAACuUGUuaGACUUUUCaUGAACa -3'
miRNA:   3'- -ACUUGcACAggCUGAAAAGcAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 132335 0.72 0.996208
Target:  5'- uUGGACuugaaGUUgGACUUUUCGUGAACa -3'
miRNA:   3'- -ACUUGca---CAGgCUGAAAAGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 132370 0.67 0.999993
Target:  5'- aUGAACuUGUuaGACUUUUCaUAAACa -3'
miRNA:   3'- -ACUUGcACAggCUGAAAAGcAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 132442 0.71 0.99898
Target:  5'- uUGAAC-UGUUauACUUUUCGUGAACa -3'
miRNA:   3'- -ACUUGcACAGgcUGAAAAGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 132473 0.67 0.99999
Target:  5'- aUGAACuUGUuaGACUUUUCaUGAACa -3'
miRNA:   3'- -ACUUGcACAggCUGAAAAGcAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 132557 0.73 0.993852
Target:  5'- aUGAACaUGUUagaccguuaGACUUUUCGUGAACa -3'
miRNA:   3'- -ACUUGcACAGg--------CUGAAAAGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 132597 0.68 0.999933
Target:  5'- aUGAACaUGUUagaccguuaGACUUUUUGUGAACa -3'
miRNA:   3'- -ACUUGcACAGg--------CUGAAAAGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 132639 0.68 0.999963
Target:  5'- -uAACaUGUUgGACUUUUUGUAAACa -3'
miRNA:   3'- acUUGcACAGgCUGAAAAGCAUUUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.