miRNA display CGI


Results 121 - 133 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11699 3' -44.4 NC_003102.1 + 132669 0.72 0.996208
Target:  5'- aUGAACcUGUUauACUUUUCGUGAACa -3'
miRNA:   3'- -ACUUGcACAGgcUGAAAAGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 132701 0.8 0.87212
Target:  5'- aUGAACcUGUuaGACUUUUCGUGAACa -3'
miRNA:   3'- -ACUUGcACAggCUGAAAAGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 132780 0.8 0.87212
Target:  5'- aUGAACcUGUuaGACUUUUCGUGAACa -3'
miRNA:   3'- -ACUUGcACAggCUGAAAAGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 132812 0.67 0.999995
Target:  5'- aUGAACaUGUuaGACUUUUaGUGAACa -3'
miRNA:   3'- -ACUUGcACAggCUGAAAAgCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 132844 0.8 0.87212
Target:  5'- aUGAACaUGUuaGACUUUUCGUGAACa -3'
miRNA:   3'- -ACUUGcACAggCUGAAAAGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 132969 0.75 0.979334
Target:  5'- aUGAACuUGUuaGACUUUUUGUGAACa -3'
miRNA:   3'- -ACUUGcACAggCUGAAAAGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 137057 0.7 0.999579
Target:  5'- uUGAACcUGUCgGACUUUUCaUAAAUa -3'
miRNA:   3'- -ACUUGcACAGgCUGAAAAGcAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 137161 0.72 0.998147
Target:  5'- cGAACGcGgCCGACUUUUcauagcCGUAGACUu -3'
miRNA:   3'- aCUUGCaCaGGCUGAAAA------GCAUUUGA- -5'
11699 3' -44.4 NC_003102.1 + 137193 0.75 0.983771
Target:  5'- cGAACGUGgCCaACUUUUCGUGuACa -3'
miRNA:   3'- aCUUGCACaGGcUGAAAAGCAUuUGa -5'
11699 3' -44.4 NC_003102.1 + 137238 0.72 0.998147
Target:  5'- cGAACGcGgCCGACUUUUcauagcCGUAGACUu -3'
miRNA:   3'- aCUUGCaCaGGCUGAAAA------GCAUUUGA- -5'
11699 3' -44.4 NC_003102.1 + 137295 0.93 0.292381
Target:  5'- -aAACGUGUCUGACUUUUCGUGGACa -3'
miRNA:   3'- acUUGCACAGGCUGAAAAGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 137371 0.93 0.292381
Target:  5'- -aAACGUGUCUGACUUUUCGUGGACa -3'
miRNA:   3'- acUUGCACAGGCUGAAAAGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 137448 0.93 0.292381
Target:  5'- -aAACGUGUCUGACUUUUCGUGGACa -3'
miRNA:   3'- acUUGCACAGGCUGAAAAGCAUUUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.