miRNA display CGI


Results 41 - 60 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11699 3' -44.4 NC_003102.1 + 104483 1.02 0.098113
Target:  5'- cGAACGUGUCUGACUUUUCGUGGACg -3'
miRNA:   3'- aCUUGCACAGGCUGAAAAGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 103791 0.98 0.162974
Target:  5'- uUGAACGcGUCCGACUUUUCGUGAACa -3'
miRNA:   3'- -ACUUGCaCAGGCUGAAAAGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 103730 0.84 0.718664
Target:  5'- -aAACGUGUCUGACUUUUCGcGGACa -3'
miRNA:   3'- acUUGCACAGGCUGAAAAGCaUUUGa -5'
11699 3' -44.4 NC_003102.1 + 103673 0.93 0.292381
Target:  5'- uUGAACGUGUCUGACUUUUCGcGGACa -3'
miRNA:   3'- -ACUUGCACAGGCUGAAAAGCaUUUGa -5'
11699 3' -44.4 NC_003102.1 + 103612 0.76 0.967859
Target:  5'- -uAACGUGUCUGACUUUUCGa----- -3'
miRNA:   3'- acUUGCACAGGCUGAAAAGCauuuga -5'
11699 3' -44.4 NC_003102.1 + 103479 0.73 0.994741
Target:  5'- cGAACcUGgCCGACUUUUCGUGcucaAACg -3'
miRNA:   3'- aCUUGcACaGGCUGAAAAGCAU----UUGa -5'
11699 3' -44.4 NC_003102.1 + 103044 0.75 0.979334
Target:  5'- aGAACGUGUCaGAUUUgggCGUGGACc -3'
miRNA:   3'- aCUUGCACAGgCUGAAaa-GCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 98011 0.86 0.586249
Target:  5'- cGAACGUGgCCGACUUUUCGUAcaAACc -3'
miRNA:   3'- aCUUGCACaGGCUGAAAAGCAU--UUGa -5'
11699 3' -44.4 NC_003102.1 + 97954 0.86 0.586249
Target:  5'- cGAACGUGgCCGACUUUUCGUAcaAACc -3'
miRNA:   3'- aCUUGCACaGGCUGAAAAGCAU--UUGa -5'
11699 3' -44.4 NC_003102.1 + 97897 0.86 0.586249
Target:  5'- cGAACGUGgCCGACUUUUCGUAcaAACc -3'
miRNA:   3'- aCUUGCACaGGCUGAAAAGCAU--UUGa -5'
11699 3' -44.4 NC_003102.1 + 97840 0.97 0.192056
Target:  5'- cGAACGUGgCCGACUUUUCGUGAACg -3'
miRNA:   3'- aCUUGCACaGGCUGAAAAGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 97820 0.68 0.999933
Target:  5'- -cAACuUGUCUGACUUUUCaUAGACg -3'
miRNA:   3'- acUUGcACAGGCUGAAAAGcAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 97764 0.68 0.999933
Target:  5'- -cAACuUGUCUGACUUUUCaUAGACg -3'
miRNA:   3'- acUUGcACAGGCUGAAAAGcAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 97707 0.68 0.999933
Target:  5'- -cAACuUGUCUGACUUUUCaUAGACa -3'
miRNA:   3'- acUUGcACAGGCUGAAAAGcAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 89640 0.69 0.999882
Target:  5'- -aAACcUGUCUGACUUUUCGUGu--- -3'
miRNA:   3'- acUUGcACAGGCUGAAAAGCAUuuga -5'
11699 3' -44.4 NC_003102.1 + 89574 0.83 0.7294
Target:  5'- uUGAACGUGUCUGACUUUUCauguuuUAAACa -3'
miRNA:   3'- -ACUUGCACAGGCUGAAAAGc-----AUUUGa -5'
11699 3' -44.4 NC_003102.1 + 89506 0.86 0.619485
Target:  5'- uUGAACGUGgCUGACUUUUCGUAGAa- -3'
miRNA:   3'- -ACUUGCACaGGCUGAAAAGCAUUUga -5'
11699 3' -44.4 NC_003102.1 + 89499 0.69 0.99992
Target:  5'- uUGGACGcGUucaaaucaaacccggCCGACUUUUCGUGguuaAACa -3'
miRNA:   3'- -ACUUGCaCA---------------GGCUGAAAAGCAU----UUGa -5'
11699 3' -44.4 NC_003102.1 + 89438 1.09 0.039662
Target:  5'- uUGAACGUGUCCGACUUUUCGUAAACUu -3'
miRNA:   3'- -ACUUGCACAGGCUGAAAAGCAUUUGA- -5'
11699 3' -44.4 NC_003102.1 + 89348 0.71 0.998472
Target:  5'- uUGAACGcGUCCaACUUUUUGUcAAACa -3'
miRNA:   3'- -ACUUGCaCAGGcUGAAAAGCA-UUUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.