miRNA display CGI


Results 81 - 100 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11699 3' -44.4 NC_003102.1 + 55787 0.67 0.99999
Target:  5'- uUGAACuUGUCUGACgUUUCGcuAACa -3'
miRNA:   3'- -ACUUGcACAGGCUGaAAAGCauUUGa -5'
11699 3' -44.4 NC_003102.1 + 55644 0.67 0.99999
Target:  5'- aUGAACuUGUuaGACUUUUCaUGAACa -3'
miRNA:   3'- -ACUUGcACAggCUGAAAAGcAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 55612 0.67 0.999986
Target:  5'- aUGAACuUGUUaaACUUUUUGUGAACa -3'
miRNA:   3'- -ACUUGcACAGgcUGAAAAGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 55411 0.75 0.979334
Target:  5'- aUGAACuUGUuaGACUUUUUGUGAACa -3'
miRNA:   3'- -ACUUGcACAggCUGAAAAGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 55321 0.73 0.993852
Target:  5'- -aAACuUGUUgGACUUUUCGUGAACa -3'
miRNA:   3'- acUUGcACAGgCUGAAAAGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 55287 0.68 0.999973
Target:  5'- aUGAACaUGUUauACUUUUUGUGAACa -3'
miRNA:   3'- -ACUUGcACAGgcUGAAAAGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 55255 0.66 0.999997
Target:  5'- aUGAACuUGUUgGACUUUUUaUGAACa -3'
miRNA:   3'- -ACUUGcACAGgCUGAAAAGcAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 55128 0.75 0.979334
Target:  5'- aUGAACuUGUuaGACUUUUUGUGAACa -3'
miRNA:   3'- -ACUUGcACAggCUGAAAAGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 55000 0.67 0.999995
Target:  5'- aUGAACuUGUuaGACUUUUUaGUGAACa -3'
miRNA:   3'- -ACUUGcACAggCUGAAAAG-CAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 54968 0.67 0.99999
Target:  5'- aUGAACaUGUuaGACUUUUCaUGAACa -3'
miRNA:   3'- -ACUUGcACAggCUGAAAAGcAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 54892 0.75 0.979334
Target:  5'- aUGAACaUGUuaGACUUUUUGUGAACa -3'
miRNA:   3'- -ACUUGcACAggCUGAAAAGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 54861 0.75 0.979334
Target:  5'- aUGAACaUGUuaGACUUUUUGUGAACa -3'
miRNA:   3'- -ACUUGcACAggCUGAAAAGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 54829 0.75 0.979334
Target:  5'- aUGAACaUGUuaGACUUUUUGUGAACa -3'
miRNA:   3'- -ACUUGcACAggCUGAAAAGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 54797 0.75 0.981653
Target:  5'- aUGAACaUGUuaGACUUUUUGUAAACa -3'
miRNA:   3'- -ACUUGcACAggCUGAAAAGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 54757 0.68 0.99995
Target:  5'- aUGAACaUGUUagaccguuaGACUUUUUGUAAACa -3'
miRNA:   3'- -ACUUGcACAGg--------CUGAAAAGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 54717 0.73 0.993852
Target:  5'- aUGAACaUGUUagaccguuaGACUUUUCGUGAACa -3'
miRNA:   3'- -ACUUGcACAGg--------CUGAAAAGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 54460 0.85 0.65282
Target:  5'- uUGAACGUGUCCGACUUUUaGcAAACa -3'
miRNA:   3'- -ACUUGCACAGGCUGAAAAgCaUUUGa -5'
11699 3' -44.4 NC_003102.1 + 54450 0.79 0.901815
Target:  5'- uUGAACGUGUCCGACUUUUg------- -3'
miRNA:   3'- -ACUUGCACAGGCUGAAAAgcauuuga -5'
11699 3' -44.4 NC_003102.1 + 49897 0.72 0.998147
Target:  5'- cGAACGU--UCGACUgg-CGUAAGCUa -3'
miRNA:   3'- aCUUGCAcaGGCUGAaaaGCAUUUGA- -5'
11699 3' -44.4 NC_003102.1 + 42896 0.75 0.976805
Target:  5'- cGAACcUGgCCGACUUUUUGUGAAUa -3'
miRNA:   3'- aCUUGcACaGGCUGAAAAGCAUUUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.