miRNA display CGI


Results 121 - 133 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11699 3' -44.4 NC_003102.1 + 25834 0.97 0.186911
Target:  5'- cUGAACGUGgCCGACUUUUCGUAAACa -3'
miRNA:   3'- -ACUUGCACaGGCUGAAAAGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 23728 0.66 0.999997
Target:  5'- aGAACaGUGUCgGGCUggcgugCGUAAAgUa -3'
miRNA:   3'- aCUUG-CACAGgCUGAaaa---GCAUUUgA- -5'
11699 3' -44.4 NC_003102.1 + 23569 0.72 0.997766
Target:  5'- cGGACGUGUUgGACUUUUUGg----- -3'
miRNA:   3'- aCUUGCACAGgCUGAAAAGCauuuga -5'
11699 3' -44.4 NC_003102.1 + 20170 0.75 0.97654
Target:  5'- cGAGCccGUGUCCGAUUUUgacgagaucacgcUCGUGGGCg -3'
miRNA:   3'- aCUUG--CACAGGCUGAAA-------------AGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 10746 0.73 0.995523
Target:  5'- uUGAACaUGUauGACUUUUUGUGAACa -3'
miRNA:   3'- -ACUUGcACAggCUGAAAAGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 10733 0.73 0.993852
Target:  5'- cGAACcUGgCCGACUUUUCGU--GCUg -3'
miRNA:   3'- aCUUGcACaGGCUGAAAAGCAuuUGA- -5'
11699 3' -44.4 NC_003102.1 + 10683 0.7 0.999336
Target:  5'- -aAACuUGUCUGACUUUUCaUGAACUg -3'
miRNA:   3'- acUUGcACAGGCUGAAAAGcAUUUGA- -5'
11699 3' -44.4 NC_003102.1 + 10599 0.93 0.307465
Target:  5'- cGAACGUGUCUGACUUUUCGUAGu-- -3'
miRNA:   3'- aCUUGCACAGGCUGAAAAGCAUUuga -5'
11699 3' -44.4 NC_003102.1 + 10575 0.76 0.964396
Target:  5'- cGAACcUGgCCGACUUUUCGUGAGg- -3'
miRNA:   3'- aCUUGcACaGGCUGAAAAGCAUUUga -5'
11699 3' -44.4 NC_003102.1 + 10516 1.04 0.080181
Target:  5'- uUGAACGUGUCUGACUUUUCGUAGACa -3'
miRNA:   3'- -ACUUGCACAGGCUGAAAAGCAUUUGa -5'
11699 3' -44.4 NC_003102.1 + 10441 0.71 0.999174
Target:  5'- -uAACuUGUCUGACUUUUCGUAGu-- -3'
miRNA:   3'- acUUGcACAGGCUGAAAAGCAUUuga -5'
11699 3' -44.4 NC_003102.1 + 10339 0.69 0.999845
Target:  5'- cGAACacGUCUGACUUgUCGUAAAa- -3'
miRNA:   3'- aCUUGcaCAGGCUGAAaAGCAUUUga -5'
11699 3' -44.4 NC_003102.1 + 126 0.68 0.99995
Target:  5'- cGAACGcGaggCCGACgag-CGUGAGCUc -3'
miRNA:   3'- aCUUGCaCa--GGCUGaaaaGCAUUUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.