miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11699 5' -47.3 NC_003102.1 + 10490 0.77 0.778391
Target:  5'- ---aACACGAAAAGUCGGcCAGGUUUg -3'
miRNA:   3'- acucUGUGCUUUUCAGUCuGUCCAAA- -5'
11699 5' -47.3 NC_003102.1 + 25885 0.77 0.778391
Target:  5'- uUGAu-CACGAAAAGUCGGcCAGGUUUg -3'
miRNA:   3'- -ACUcuGUGCUUUUCAGUCuGUCCAAA- -5'
11699 5' -47.3 NC_003102.1 + 26012 0.77 0.795261
Target:  5'- aGAGuuaaaguggcuuaaGCACGAAAAGUCGGcCAGGUUc -3'
miRNA:   3'- aCUC--------------UGUGCUUUUCAGUCuGUCCAAa -5'
11699 5' -47.3 NC_003102.1 + 10655 0.77 0.807828
Target:  5'- ---aGCACGAAAAGUCGGcCAGGUUa -3'
miRNA:   3'- acucUGUGCUUUUCAGUCuGUCCAAa -5'
11699 5' -47.3 NC_003102.1 + 89323 0.72 0.955176
Target:  5'- ----cCACGAAAAGUCGGcCGGGUUUg -3'
miRNA:   3'- acucuGUGCUUUUCAGUCuGUCCAAA- -5'
11699 5' -47.3 NC_003102.1 + 25944 0.73 0.946253
Target:  5'- uUGAGACA--AAAAGUCGGcCAGGUUc -3'
miRNA:   3'- -ACUCUGUgcUUUUCAGUCuGUCCAAa -5'
11699 5' -47.3 NC_003102.1 + 121646 0.73 0.941382
Target:  5'- cGAuGACuuauCGAAAAGUCGGcCAGGUUc -3'
miRNA:   3'- aCU-CUGu---GCUUUUCAGUCuGUCCAAa -5'
11699 5' -47.3 NC_003102.1 + 10408 0.73 0.941382
Target:  5'- uUGGccuCACGAAAAGUCGGcCAGGUUc -3'
miRNA:   3'- -ACUcu-GUGCUUUUCAGUCuGUCCAAa -5'
11699 5' -47.3 NC_003102.1 + 26106 0.75 0.885026
Target:  5'- ---aACACGAAAAGUCGGcCAGGUUc -3'
miRNA:   3'- acucUGUGCUUUUCAGUCuGUCCAAa -5'
11699 5' -47.3 NC_003102.1 + 10565 0.76 0.844418
Target:  5'- gUGAuucaGCACGAAAAGUCGGcCAGGUUc -3'
miRNA:   3'- -ACUc---UGUGCUUUUCAGUCuGUCCAAa -5'
11699 5' -47.3 NC_003102.1 + 76637 0.67 0.998631
Target:  5'- -----aACGAAAAGUCGGcCAGGUUc -3'
miRNA:   3'- acucugUGCUUUUCAGUCuGUCCAAa -5'
11699 5' -47.3 NC_003102.1 + 118421 0.67 0.998881
Target:  5'- cGuGugGCaGAccGUCAGGCAGGUg- -3'
miRNA:   3'- aCuCugUGcUUuuCAGUCUGUCCAaa -5'
11699 5' -47.3 NC_003102.1 + 112640 0.67 0.999091
Target:  5'- -aAGAUuauuuuAUGAAAAGUCAGcCAGGUUc -3'
miRNA:   3'- acUCUG------UGCUUUUCAGUCuGUCCAAa -5'
11699 5' -47.3 NC_003102.1 + 137219 0.66 0.999412
Target:  5'- ----uUAUGAAAAGUCcGACAGGUUc -3'
miRNA:   3'- acucuGUGCUUUUCAGuCUGUCCAAa -5'
11699 5' -47.3 NC_003102.1 + 132946 0.66 0.999531
Target:  5'- aUGuu-CACGAAAAGUCuaACAGGUUc -3'
miRNA:   3'- -ACucuGUGCUUUUCAGucUGUCCAAa -5'
11699 5' -47.3 NC_003102.1 + 132866 0.66 0.999531
Target:  5'- aUGuu-CACGAAAAGUCuaACAGGUUc -3'
miRNA:   3'- -ACucuGUGCUUUUCAGucUGUCCAAa -5'
11699 5' -47.3 NC_003102.1 + 10677 0.66 0.999531
Target:  5'- ----cUACGAAAAGUCAGACAcGUUc -3'
miRNA:   3'- acucuGUGCUUUUCAGUCUGUcCAAa -5'
11699 5' -47.3 NC_003102.1 + 26302 0.66 0.999531
Target:  5'- --cGACauguuaACGAAAAGUCAGACAcGUUc -3'
miRNA:   3'- acuCUG------UGCUUUUCAGUCUGUcCAAa -5'
11699 5' -47.3 NC_003102.1 + 104454 0.66 0.999629
Target:  5'- cGAuGGCuuauCGAAAAGUCAacCAGGUUa -3'
miRNA:   3'- aCU-CUGu---GCUUUUCAGUcuGUCCAAa -5'
11699 5' -47.3 NC_003102.1 + 112816 0.84 0.437098
Target:  5'- aUGuu-CACGAAAAGUCAGACAGGUUc -3'
miRNA:   3'- -ACucuGUGCUUUUCAGUCUGUCCAAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.