miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1170 5' -54.8 NC_001132.2 + 160418 0.66 0.928341
Target:  5'- --cGGGcuGCUCCGUAcccgUCGCGCCAUc- -3'
miRNA:   3'- gcuCCC--UGAGGUAUa---GGCGCGGUAua -5'
1170 5' -54.8 NC_001132.2 + 145430 0.73 0.616349
Target:  5'- aGAGGGGCUUCGUcGUCCGCcgggguGCCGUu- -3'
miRNA:   3'- gCUCCCUGAGGUA-UAGGCG------CGGUAua -5'
1170 5' -54.8 NC_001132.2 + 142402 1.05 0.006407
Target:  5'- gCGAGGGACUCCAUAUCCGCGCCAUAUu -3'
miRNA:   3'- -GCUCCCUGAGGUAUAGGCGCGGUAUA- -5'
1170 5' -54.8 NC_001132.2 + 142309 0.69 0.82596
Target:  5'- aGAGGGGuCgcguaccacccguagUCCGcAUCCGCGCCGUu- -3'
miRNA:   3'- gCUCCCU-G---------------AGGUaUAGGCGCGGUAua -5'
1170 5' -54.8 NC_001132.2 + 35400 0.66 0.933529
Target:  5'- gGGGGGAaa--GUAUUCGCGCCGa-- -3'
miRNA:   3'- gCUCCCUgaggUAUAGGCGCGGUaua -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.