miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11700 3' -42.8 NC_003102.1 + 59783 0.66 1
Target:  5'- uUCGUACgUGUGGGc----AGCGACGGCg -3'
miRNA:   3'- -GGCAUG-ACAUCUuaucaUUGCUGUUG- -5'
11700 3' -42.8 NC_003102.1 + 125074 0.66 1
Target:  5'- aCCGguUAC-GUAaAGUGGUAGCGACGuaACg -3'
miRNA:   3'- -GGC--AUGaCAUcUUAUCAUUGCUGU--UG- -5'
11700 3' -42.8 NC_003102.1 + 13029 0.66 1
Target:  5'- cCCGUcCUGUGucAUGGUGAaaaACAACg -3'
miRNA:   3'- -GGCAuGACAUcuUAUCAUUgc-UGUUG- -5'
11700 3' -42.8 NC_003102.1 + 74917 0.66 1
Target:  5'- cCCGU---GUAGAAgc-UGGCGACGGCa -3'
miRNA:   3'- -GGCAugaCAUCUUaucAUUGCUGUUG- -5'
11700 3' -42.8 NC_003102.1 + 121177 0.67 1
Target:  5'- uCCGUACUGUAGAucccaAACGuuucgaGACg -3'
miRNA:   3'- -GGCAUGACAUCUuaucaUUGCug----UUG- -5'
11700 3' -42.8 NC_003102.1 + 114113 0.67 0.999999
Target:  5'- aCGUuuauACUGUuccuUGGUGGCGugAACa -3'
miRNA:   3'- gGCA----UGACAucuuAUCAUUGCugUUG- -5'
11700 3' -42.8 NC_003102.1 + 78630 0.68 0.999997
Target:  5'- aUCGUACagUGUAGAGU-GU-ACGGCGAg -3'
miRNA:   3'- -GGCAUG--ACAUCUUAuCAuUGCUGUUg -5'
11700 3' -42.8 NC_003102.1 + 48964 0.68 0.999997
Target:  5'- uCCGUcaugaccaGCgacgAGAGcAGUAGCGACGGCu -3'
miRNA:   3'- -GGCA--------UGaca-UCUUaUCAUUGCUGUUG- -5'
11700 3' -42.8 NC_003102.1 + 86541 0.69 0.999996
Target:  5'- -aGUGCUGUcaAGAucaaaGACGACGACg -3'
miRNA:   3'- ggCAUGACA--UCUuaucaUUGCUGUUG- -5'
11700 3' -42.8 NC_003102.1 + 99771 0.69 0.999996
Target:  5'- cCCGagacuaUACUGUc-GAUAGUGAgGACGGCu -3'
miRNA:   3'- -GGC------AUGACAucUUAUCAUUgCUGUUG- -5'
11700 3' -42.8 NC_003102.1 + 38933 0.69 0.999994
Target:  5'- aUCGgGCUGUGauGUGGUcaaaAGCGGCGGCg -3'
miRNA:   3'- -GGCaUGACAUcuUAUCA----UUGCUGUUG- -5'
11700 3' -42.8 NC_003102.1 + 11284 0.69 0.999992
Target:  5'- aUCGUAC-GUGGAcUGGUGcgGCGuACGACu -3'
miRNA:   3'- -GGCAUGaCAUCUuAUCAU--UGC-UGUUG- -5'
11700 3' -42.8 NC_003102.1 + 80848 0.69 0.999992
Target:  5'- aCGUGC-GUGGAAUugau-CGACGACa -3'
miRNA:   3'- gGCAUGaCAUCUUAucauuGCUGUUG- -5'
11700 3' -42.8 NC_003102.1 + 1647 0.71 0.999895
Target:  5'- ---gAUUGUGGuaaaGGUGGUGGCGGCGGCg -3'
miRNA:   3'- ggcaUGACAUC----UUAUCAUUGCUGUUG- -5'
11700 3' -42.8 NC_003102.1 + 77695 0.72 0.999513
Target:  5'- -aGUAcCUGUAcAAUcGUAACGACAACg -3'
miRNA:   3'- ggCAU-GACAUcUUAuCAUUGCUGUUG- -5'
11700 3' -42.8 NC_003102.1 + 72717 0.74 0.997462
Target:  5'- aCGgug-GUGGaAAUGGUAGCGGCGGCg -3'
miRNA:   3'- gGCaugaCAUC-UUAUCAUUGCUGUUG- -5'
11700 3' -42.8 NC_003102.1 + 101829 1.16 0.024378
Target:  5'- aCCGUACUGUAGAAUAGUAACGACAACa -3'
miRNA:   3'- -GGCAUGACAUCUUAUCAUUGCUGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.