miRNA display CGI


Results 41 - 60 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11701 5' -47.6 NC_003102.1 + 121841 0.86 0.338803
Target:  5'- aCUaCGAAAAGUCAGACACGUUCGAu -3'
miRNA:   3'- aGGcGCUUUUCAGUCUGUGCAAGUUu -5'
11701 5' -47.6 NC_003102.1 + 67239 0.79 0.692096
Target:  5'- gUuuGCaAAAAGUCAGACACGUUUGAAu -3'
miRNA:   3'- -AggCGcUUUUCAGUCUGUGCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 67138 0.78 0.724316
Target:  5'- ---aCGAAAAGUCAGACACGUUUGAAu -3'
miRNA:   3'- aggcGCUUUUCAGUCUGUGCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 10411 0.67 0.998458
Target:  5'- gCCucaCGAAAAGUCGGcCAgGUUCGAu -3'
miRNA:   3'- aGGc--GCUUUUCAGUCuGUgCAAGUUu -5'
11701 5' -47.6 NC_003102.1 + 137287 0.88 0.277977
Target:  5'- gUCCaCGAAAAGUCAGACACGUUUGAAu -3'
miRNA:   3'- -AGGcGCUUUUCAGUCUGUGCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 137210 0.88 0.277977
Target:  5'- gUCCaCGAAAAGUCAGACACGUUUGAAu -3'
miRNA:   3'- -AGGcGCUUUUCAGUCUGUGCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 104321 0.94 0.131523
Target:  5'- gUCCaCGAAAAGUCAGACACGUUCGAAu -3'
miRNA:   3'- -AGGcGCUUUUCAGUCUGUGCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 55968 0.85 0.39951
Target:  5'- ---aCGAAAAGUCAGACACGUUCAAAu -3'
miRNA:   3'- aggcGCUUUUCAGUCUGUGCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 36182 0.84 0.437181
Target:  5'- gUuuGCuAAAAGUCGGACACGUUCAAAu -3'
miRNA:   3'- -AggCGcUUUUCAGUCUGUGCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 89415 0.82 0.507668
Target:  5'- ---aUGAAAAGUCAGACACGUUCAAAu -3'
miRNA:   3'- aggcGCUUUUCAGUCUGUGCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 26545 0.67 0.997714
Target:  5'- -aUGCGccaucuaAAAAGUCGGcCACGUUCGAu -3'
miRNA:   3'- agGCGC-------UUUUCAGUCuGUGCAAGUUu -5'
11701 5' -47.6 NC_003102.1 + 36072 0.7 0.985883
Target:  5'- ---aUGAAAAGUCGGcCACGUUCAAu -3'
miRNA:   3'- aggcGCUUUUCAGUCuGUGCAAGUUu -5'
11701 5' -47.6 NC_003102.1 + 104611 0.71 0.968441
Target:  5'- ---aUGAAAAGUCGGcCACGUUCAAAu -3'
miRNA:   3'- aggcGCUUUUCAGUCuGUGCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 76454 0.71 0.968441
Target:  5'- ---aUGAAAAGUCGGcCACGUUCAAAu -3'
miRNA:   3'- aggcGCUUUUCAGUCuGUGCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 97846 0.72 0.961431
Target:  5'- gUuuGUacGAAAAGUCGGcCACGUUCGAu -3'
miRNA:   3'- -AggCG--CUUUUCAGUCuGUGCAAGUUu -5'
11701 5' -47.6 NC_003102.1 + 89481 0.72 0.95341
Target:  5'- -aCaCGAAAAGUCAGACAgGUUUAAu -3'
miRNA:   3'- agGcGCUUUUCAGUCUGUgCAAGUUu -5'
11701 5' -47.6 NC_003102.1 + 97733 0.72 0.961431
Target:  5'- gUuuGUacGAAAAGUCGGcCACGUUCGAu -3'
miRNA:   3'- -AggCG--CUUUUCAGUCuGUGCAAGUUu -5'
11701 5' -47.6 NC_003102.1 + 96424 0.73 0.928682
Target:  5'- aUgGCGAuuccAAAGUgAGACGCGUUCGAc -3'
miRNA:   3'- aGgCGCU----UUUCAgUCUGUGCAAGUUu -5'
11701 5' -47.6 NC_003102.1 + 112618 0.81 0.571655
Target:  5'- gUCCaCGAcuauaaAAAGUCAGACACGUUCGAu -3'
miRNA:   3'- -AGGcGCU------UUUCAGUCUGUGCAAGUUu -5'
11701 5' -47.6 NC_003102.1 + 61355 0.81 0.571655
Target:  5'- ----aGAAAAGUCAGACACGUUCGAAu -3'
miRNA:   3'- aggcgCUUUUCAGUCUGUGCAAGUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.