miRNA display CGI


Results 61 - 79 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11701 5' -47.6 NC_003102.1 + 47269 0.78 0.755713
Target:  5'- -aCGCGAAAuAGUCAGGCGCGUUUu-- -3'
miRNA:   3'- agGCGCUUU-UCAGUCUGUGCAAGuuu -5'
11701 5' -47.6 NC_003102.1 + 10573 0.66 0.999457
Target:  5'- -gCaCGAAAAGUCGGcCAgGUUCGAAu -3'
miRNA:   3'- agGcGCUUUUCAGUCuGUgCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 67142 0.66 0.99916
Target:  5'- aUCGCuuaucGAAAAGUCGGcCAgGUUCGAu -3'
miRNA:   3'- aGGCG-----CUUUUCAGUCuGUgCAAGUUu -5'
11701 5' -47.6 NC_003102.1 + 42567 0.66 0.99916
Target:  5'- gUUCaCGAAAAGUCAGACAaguUGUaaUCGAAc -3'
miRNA:   3'- -AGGcGCUUUUCAGUCUGU---GCA--AGUUU- -5'
11701 5' -47.6 NC_003102.1 + 137032 0.67 0.998733
Target:  5'- -aCaCGAAAAGUUGGcCACGUUCGAu -3'
miRNA:   3'- agGcGCUUUUCAGUCuGUGCAAGUUu -5'
11701 5' -47.6 NC_003102.1 + 25808 0.67 0.998733
Target:  5'- aUCaCGAAAAGUCGGcCAgGUUCGAu -3'
miRNA:   3'- aGGcGCUUUUCAGUCuGUgCAAGUUu -5'
11701 5' -47.6 NC_003102.1 + 77936 0.67 0.998458
Target:  5'- uUCUGCGGGcGGcagCAucGACACGUUCAu- -3'
miRNA:   3'- -AGGCGCUUuUCa--GU--CUGUGCAAGUuu -5'
11701 5' -47.6 NC_003102.1 + 10411 0.67 0.998458
Target:  5'- gCCucaCGAAAAGUCGGcCAgGUUCGAu -3'
miRNA:   3'- aGGc--GCUUUUCAGUCuGUgCAAGUUu -5'
11701 5' -47.6 NC_003102.1 + 26545 0.67 0.997714
Target:  5'- -aUGCGccaucuaAAAAGUCGGcCACGUUCGAu -3'
miRNA:   3'- agGCGC-------UUUUCAGUCuGUGCAAGUUu -5'
11701 5' -47.6 NC_003102.1 + 36072 0.7 0.985883
Target:  5'- ---aUGAAAAGUCGGcCACGUUCAAu -3'
miRNA:   3'- aggcGCUUUUCAGUCuGUGCAAGUUu -5'
11701 5' -47.6 NC_003102.1 + 104611 0.71 0.968441
Target:  5'- ---aUGAAAAGUCGGcCACGUUCAAAu -3'
miRNA:   3'- aggcGCUUUUCAGUCuGUGCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 76454 0.71 0.968441
Target:  5'- ---aUGAAAAGUCGGcCACGUUCAAAu -3'
miRNA:   3'- aggcGCUUUUCAGUCuGUGCAAGUUU- -5'
11701 5' -47.6 NC_003102.1 + 97846 0.72 0.961431
Target:  5'- gUuuGUacGAAAAGUCGGcCACGUUCGAu -3'
miRNA:   3'- -AggCG--CUUUUCAGUCuGUGCAAGUUu -5'
11701 5' -47.6 NC_003102.1 + 97733 0.72 0.961431
Target:  5'- gUuuGUacGAAAAGUCGGcCACGUUCGAu -3'
miRNA:   3'- -AggCG--CUUUUCAGUCuGUGCAAGUUu -5'
11701 5' -47.6 NC_003102.1 + 89481 0.72 0.95341
Target:  5'- -aCaCGAAAAGUCAGACAgGUUUAAu -3'
miRNA:   3'- agGcGCUUUUCAGUCUGUgCAAGUUu -5'
11701 5' -47.6 NC_003102.1 + 96424 0.73 0.928682
Target:  5'- aUgGCGAuuccAAAGUgAGACGCGUUCGAc -3'
miRNA:   3'- aGgCGCU----UUUCAgUCUGUGCAAGUUu -5'
11701 5' -47.6 NC_003102.1 + 97678 0.75 0.867033
Target:  5'- gUUCaCGAAAAGUCGGcCACGUUCGAu -3'
miRNA:   3'- -AGGcGCUUUUCAGUCuGUGCAAGUUu -5'
11701 5' -47.6 NC_003102.1 + 112440 0.77 0.776032
Target:  5'- uUUCGUaacuAAAAGUCGGACACGUUCGAu -3'
miRNA:   3'- -AGGCGc---UUUUCAGUCUGUGCAAGUUu -5'
11701 5' -47.6 NC_003102.1 + 103510 1.07 0.019995
Target:  5'- gUCCGCGAAAAGUCAGACACGUUCAAAu -3'
miRNA:   3'- -AGGCGCUUUUCAGUCUGUGCAAGUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.