Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
11704 | 3' | -53 | NC_003102.1 | + | 27666 | 0.66 | 0.970659 |
Target: 5'- aCCgau-CGGCCAUGUCCAaguuggUCGAGuauGCg -3' miRNA: 3'- -GGaagcGCCGGUGCAGGUa-----AGCUU---CG- -5' |
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11704 | 3' | -53 | NC_003102.1 | + | 69368 | 0.66 | 0.970367 |
Target: 5'- aCUUCGUgcaccaaaaacucGGCCACGUCguUuacuUCGucGCu -3' miRNA: 3'- gGAAGCG-------------CCGGUGCAGguA----AGCuuCG- -5' |
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11704 | 3' | -53 | NC_003102.1 | + | 133733 | 0.66 | 0.970073 |
Target: 5'- --aUCGgGGCCGCGUCgCAgccgccguagugUCGccGCa -3' miRNA: 3'- ggaAGCgCCGGUGCAG-GUa-----------AGCuuCG- -5' |
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11704 | 3' | -53 | NC_003102.1 | + | 26560 | 0.66 | 0.96764 |
Target: 5'- ----aGuCGGCCACGUUCgAUUCGAAcGUg -3' miRNA: 3'- ggaagC-GCCGGUGCAGG-UAAGCUU-CG- -5' |
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11704 | 3' | -53 | NC_003102.1 | + | 15655 | 0.67 | 0.964407 |
Target: 5'- --aUCGCGGCgagACGUCgUGUUgGAGGCu -3' miRNA: 3'- ggaAGCGCCGg--UGCAG-GUAAgCUUCG- -5' |
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11704 | 3' | -53 | NC_003102.1 | + | 63835 | 0.67 | 0.964407 |
Target: 5'- ---gCGCGGCguCGacguaUCCGUUCcGGAGCu -3' miRNA: 3'- ggaaGCGCCGguGC-----AGGUAAG-CUUCG- -5' |
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11704 | 3' | -53 | NC_003102.1 | + | 86608 | 0.68 | 0.94485 |
Target: 5'- --aUCGCGGCUGCGUUUugAUUCuauggucguaugGAAGCg -3' miRNA: 3'- ggaAGCGCCGGUGCAGG--UAAG------------CUUCG- -5' |
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11704 | 3' | -53 | NC_003102.1 | + | 26514 | 0.68 | 0.940231 |
Target: 5'- ----aGuCGGCCACGUUCgAUUCGAaccuGGCu -3' miRNA: 3'- ggaagC-GCCGGUGCAGG-UAAGCU----UCG- -5' |
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11704 | 3' | -53 | NC_003102.1 | + | 18371 | 0.68 | 0.930265 |
Target: 5'- aUCUUgGCGGUCGCGuUCCAaaacggCGgcGCc -3' miRNA: 3'- -GGAAgCGCCGGUGC-AGGUaa----GCuuCG- -5' |
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11704 | 3' | -53 | NC_003102.1 | + | 37256 | 0.69 | 0.913482 |
Target: 5'- aCCUcUCGCGGUUcuCGuUCCAUUCGAcGUc -3' miRNA: 3'- -GGA-AGCGCCGGu-GC-AGGUAAGCUuCG- -5' |
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11704 | 3' | -53 | NC_003102.1 | + | 100299 | 0.69 | 0.913482 |
Target: 5'- ---aCGUGGUCGCGUCCAUagcaaaCGcGGCa -3' miRNA: 3'- ggaaGCGCCGGUGCAGGUAa-----GCuUCG- -5' |
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11704 | 3' | -53 | NC_003102.1 | + | 35475 | 0.69 | 0.9074 |
Target: 5'- uCCgaaGaCGGCCGCGUCgAUccgugCGAAGUg -3' miRNA: 3'- -GGaagC-GCCGGUGCAGgUAa----GCUUCG- -5' |
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11704 | 3' | -53 | NC_003102.1 | + | 52311 | 0.69 | 0.894518 |
Target: 5'- aUCUUUggcgGUGGCCGCGUCCGauaGgcGCa -3' miRNA: 3'- -GGAAG----CGCCGGUGCAGGUaagCuuCG- -5' |
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11704 | 3' | -53 | NC_003102.1 | + | 134359 | 0.7 | 0.887723 |
Target: 5'- gUUUCGaCGGCCAgcucgUGUCCGgcggcaguUUCGAAGUc -3' miRNA: 3'- gGAAGC-GCCGGU-----GCAGGU--------AAGCUUCG- -5' |
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11704 | 3' | -53 | NC_003102.1 | + | 49118 | 0.7 | 0.880697 |
Target: 5'- gCCcUCGCGGgCAUGUCUugaUCGAaauacGGCa -3' miRNA: 3'- -GGaAGCGCCgGUGCAGGua-AGCU-----UCG- -5' |
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11704 | 3' | -53 | NC_003102.1 | + | 91340 | 0.74 | 0.681637 |
Target: 5'- ----gGCGGCCGCGUCCGagUCGAAu- -3' miRNA: 3'- ggaagCGCCGGUGCAGGUa-AGCUUcg -5' |
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11704 | 3' | -53 | NC_003102.1 | + | 127176 | 1.15 | 0.002543 |
Target: 5'- gCCUUCGCGGCCACGUCCAUUCGAAGCg -3' miRNA: 3'- -GGAAGCGCCGGUGCAGGUAAGCUUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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