miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11704 3' -53 NC_003102.1 + 27666 0.66 0.970659
Target:  5'- aCCgau-CGGCCAUGUCCAaguuggUCGAGuauGCg -3'
miRNA:   3'- -GGaagcGCCGGUGCAGGUa-----AGCUU---CG- -5'
11704 3' -53 NC_003102.1 + 69368 0.66 0.970367
Target:  5'- aCUUCGUgcaccaaaaacucGGCCACGUCguUuacuUCGucGCu -3'
miRNA:   3'- gGAAGCG-------------CCGGUGCAGguA----AGCuuCG- -5'
11704 3' -53 NC_003102.1 + 133733 0.66 0.970073
Target:  5'- --aUCGgGGCCGCGUCgCAgccgccguagugUCGccGCa -3'
miRNA:   3'- ggaAGCgCCGGUGCAG-GUa-----------AGCuuCG- -5'
11704 3' -53 NC_003102.1 + 26560 0.66 0.96764
Target:  5'- ----aGuCGGCCACGUUCgAUUCGAAcGUg -3'
miRNA:   3'- ggaagC-GCCGGUGCAGG-UAAGCUU-CG- -5'
11704 3' -53 NC_003102.1 + 15655 0.67 0.964407
Target:  5'- --aUCGCGGCgagACGUCgUGUUgGAGGCu -3'
miRNA:   3'- ggaAGCGCCGg--UGCAG-GUAAgCUUCG- -5'
11704 3' -53 NC_003102.1 + 63835 0.67 0.964407
Target:  5'- ---gCGCGGCguCGacguaUCCGUUCcGGAGCu -3'
miRNA:   3'- ggaaGCGCCGguGC-----AGGUAAG-CUUCG- -5'
11704 3' -53 NC_003102.1 + 86608 0.68 0.94485
Target:  5'- --aUCGCGGCUGCGUUUugAUUCuauggucguaugGAAGCg -3'
miRNA:   3'- ggaAGCGCCGGUGCAGG--UAAG------------CUUCG- -5'
11704 3' -53 NC_003102.1 + 26514 0.68 0.940231
Target:  5'- ----aGuCGGCCACGUUCgAUUCGAaccuGGCu -3'
miRNA:   3'- ggaagC-GCCGGUGCAGG-UAAGCU----UCG- -5'
11704 3' -53 NC_003102.1 + 18371 0.68 0.930265
Target:  5'- aUCUUgGCGGUCGCGuUCCAaaacggCGgcGCc -3'
miRNA:   3'- -GGAAgCGCCGGUGC-AGGUaa----GCuuCG- -5'
11704 3' -53 NC_003102.1 + 100299 0.69 0.913482
Target:  5'- ---aCGUGGUCGCGUCCAUagcaaaCGcGGCa -3'
miRNA:   3'- ggaaGCGCCGGUGCAGGUAa-----GCuUCG- -5'
11704 3' -53 NC_003102.1 + 37256 0.69 0.913482
Target:  5'- aCCUcUCGCGGUUcuCGuUCCAUUCGAcGUc -3'
miRNA:   3'- -GGA-AGCGCCGGu-GC-AGGUAAGCUuCG- -5'
11704 3' -53 NC_003102.1 + 35475 0.69 0.9074
Target:  5'- uCCgaaGaCGGCCGCGUCgAUccgugCGAAGUg -3'
miRNA:   3'- -GGaagC-GCCGGUGCAGgUAa----GCUUCG- -5'
11704 3' -53 NC_003102.1 + 52311 0.69 0.894518
Target:  5'- aUCUUUggcgGUGGCCGCGUCCGauaGgcGCa -3'
miRNA:   3'- -GGAAG----CGCCGGUGCAGGUaagCuuCG- -5'
11704 3' -53 NC_003102.1 + 134359 0.7 0.887723
Target:  5'- gUUUCGaCGGCCAgcucgUGUCCGgcggcaguUUCGAAGUc -3'
miRNA:   3'- gGAAGC-GCCGGU-----GCAGGU--------AAGCUUCG- -5'
11704 3' -53 NC_003102.1 + 49118 0.7 0.880697
Target:  5'- gCCcUCGCGGgCAUGUCUugaUCGAaauacGGCa -3'
miRNA:   3'- -GGaAGCGCCgGUGCAGGua-AGCU-----UCG- -5'
11704 3' -53 NC_003102.1 + 91340 0.74 0.681637
Target:  5'- ----gGCGGCCGCGUCCGagUCGAAu- -3'
miRNA:   3'- ggaagCGCCGGUGCAGGUa-AGCUUcg -5'
11704 3' -53 NC_003102.1 + 127176 1.15 0.002543
Target:  5'- gCCUUCGCGGCCACGUCCAUUCGAAGCg -3'
miRNA:   3'- -GGAAGCGCCGGUGCAGGUAAGCUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.