Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11705 | 3' | -51.5 | NC_003102.1 | + | 136799 | 1.06 | 0.01122 |
Target: 5'- aCGAGACCGGUUCGAUCGAAGACAGAUc -3' miRNA: 3'- -GCUCUGGCCAAGCUAGCUUCUGUCUA- -5' |
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11705 | 3' | -51.5 | NC_003102.1 | + | 64559 | 0.76 | 0.639014 |
Target: 5'- aGGGACCGGcucgagaUUUGAUCGAcggAGACGGAg -3' miRNA: 3'- gCUCUGGCC-------AAGCUAGCU---UCUGUCUa -5' |
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11705 | 3' | -51.5 | NC_003102.1 | + | 22112 | 0.68 | 0.96008 |
Target: 5'- --cGGCCGGUUUGGUgCGAAGAUAa-- -3' miRNA: 3'- gcuCUGGCCAAGCUA-GCUUCUGUcua -5' |
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11705 | 3' | -51.5 | NC_003102.1 | + | 136452 | 0.68 | 0.956271 |
Target: 5'- cCGua--CGGUUCGAaUGAAGGCAGAUg -3' miRNA: 3'- -GCucugGCCAAGCUaGCUUCUGUCUA- -5' |
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11705 | 3' | -51.5 | NC_003102.1 | + | 114804 | 0.66 | 0.986317 |
Target: 5'- uGuGACCGaUUCGAUCGAgucuauAGACAcGAUc -3' miRNA: 3'- gCuCUGGCcAAGCUAGCU------UCUGU-CUA- -5' |
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11705 | 3' | -51.5 | NC_003102.1 | + | 79679 | 0.66 | 0.990698 |
Target: 5'- gCGAGACCGGaUCGAUUGAuacCAa-- -3' miRNA: 3'- -GCUCUGGCCaAGCUAGCUucuGUcua -5' |
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11705 | 3' | -51.5 | NC_003102.1 | + | 1752 | 0.66 | 0.990698 |
Target: 5'- -aGGAUCgauGGUUCGAUCGGuuuAGACAGu- -3' miRNA: 3'- gcUCUGG---CCAAGCUAGCU---UCUGUCua -5' |
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11705 | 3' | -51.5 | NC_003102.1 | + | 1818 | 0.66 | 0.990698 |
Target: 5'- -aGGAUCgauGGUUCGAUCGGuuuAGACAGu- -3' miRNA: 3'- gcUCUGG---CCAAGCUAGCU---UCUGUCua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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