miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11705 5' -52.4 NC_003102.1 + 136834 1.1 0.005407
Target:  5'- uCGAUCAUGUUUUCGGCCCACCAGCGGc -3'
miRNA:   3'- -GCUAGUACAAAAGCCGGGUGGUCGCC- -5'
11705 5' -52.4 NC_003102.1 + 134392 0.74 0.718719
Target:  5'- gCGGUCGcaagaaUUUGGCgCCGCCGGCGGa -3'
miRNA:   3'- -GCUAGUacaa--AAGCCG-GGUGGUCGCC- -5'
11705 5' -52.4 NC_003102.1 + 129769 0.67 0.9643
Target:  5'- aCGAUagcaacuUGaugUCGGCCgACCGGCGa -3'
miRNA:   3'- -GCUAgu-----ACaaaAGCCGGgUGGUCGCc -5'
11705 5' -52.4 NC_003102.1 + 114978 0.68 0.941715
Target:  5'- aCGAUCGUGUcUauagacucgaucgaaUCGGUCaCAUUGGCGGu -3'
miRNA:   3'- -GCUAGUACAaA---------------AGCCGG-GUGGUCGCC- -5'
11705 5' -52.4 NC_003102.1 + 85023 0.69 0.918601
Target:  5'- aCGGUCAcGUUg--GGCCaguacacguacgCGCCGGCGGg -3'
miRNA:   3'- -GCUAGUaCAAaagCCGG------------GUGGUCGCC- -5'
11705 5' -52.4 NC_003102.1 + 80515 0.66 0.984749
Target:  5'- -aAUCAUGUUUUCGGaauCACCGuuGCGa -3'
miRNA:   3'- gcUAGUACAAAAGCCgg-GUGGU--CGCc -5'
11705 5' -52.4 NC_003102.1 + 70776 0.67 0.957085
Target:  5'- gCGAUCGUGUUUuguaucaugcUCGGC--ACCGGCa- -3'
miRNA:   3'- -GCUAGUACAAA----------AGCCGggUGGUCGcc -5'
11705 5' -52.4 NC_003102.1 + 31881 0.66 0.973461
Target:  5'- aCGAUCGg----UCGcGCCCGCCgAGCa- -3'
miRNA:   3'- -GCUAGUacaaaAGC-CGGGUGG-UCGcc -5'
11705 5' -52.4 NC_003102.1 + 17299 0.68 0.939812
Target:  5'- cCGAUCGUGcgg-CGuGCCCGCCAuCGa -3'
miRNA:   3'- -GCUAGUACaaaaGC-CGGGUGGUcGCc -5'
11705 5' -52.4 NC_003102.1 + 15103 0.66 0.973461
Target:  5'- uGAUCAUcaUUcgaUCGGUCgcgaACCGGCGGu -3'
miRNA:   3'- gCUAGUAcaAA---AGCCGGg---UGGUCGCC- -5'
11705 5' -52.4 NC_003102.1 + 2940 0.66 0.980784
Target:  5'- aCGAgacCAUGgacUUUUGGgCCAUCGGCGu -3'
miRNA:   3'- -GCUa--GUACa--AAAGCCgGGUGGUCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.