miRNA: 3'- aCAAUGUUGAuGUCCg---GCUCUUAUca -5'
miRNA: 3'- acAAUGUUGAUGU-----CCGGCUCU-----UAUCA- -5'
miRNA: 3'- -ACAAUGUUGAUGUCCGGCUCUUAUCA- -5'
Results 1 - 3 of 3 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 11720 | 5' | -46.8 | NC_003113.1 | + | 1417 | 0.7 | 0.44664 |
|
Target: 5'- gGUUACAGCU-CAGGgugaCGAGGAUAc- -3' miRNA: 3'- aCAAUGUUGAuGUCCg---GCUCUUAUca -5' |
|||||||
| 11720 | 5' | -46.8 | NC_003113.1 | + | 3144 | 0.72 | 0.34655 |
|
Target: 5'- -aUUGCGACUACAgcgacGGCUGAGGccucuGUAGUg -3' miRNA: 3'- acAAUGUUGAUGU-----CCGGCUCU-----UAUCA- -5' |
|||||||
| 11720 | 5' | -46.8 | NC_003113.1 | + | 2473 | 1.1 | 0.000625 |
|
Target: 5'- uUGUUACAACUACAGGCCGAGAAUAGUg -3' miRNA: 3'- -ACAAUGUUGAUGUCCGGCUCUUAUCA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home