Results 1 - 4 of 4 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11734 | 3' | -55.8 | NC_003215.1 | + | 7492 | 0.65 | 0.292117 |
Target: 5'- gCCAAGgaCGGGCC-GCCGgGCGcgggcgccaccggCGGCCg -3' miRNA: 3'- -GGUUCa-GCUUGGaCGGC-CGCa------------GUCGG- -5' |
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11734 | 3' | -55.8 | NC_003215.1 | + | 1513 | 0.67 | 0.235445 |
Target: 5'- aCCAAG-CGAgaguuaauACCUGUucucgacgCGuCGUCAGCCa -3' miRNA: 3'- -GGUUCaGCU--------UGGACG--------GCcGCAGUCGG- -5' |
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11734 | 3' | -55.8 | NC_003215.1 | + | 5271 | 0.76 | 0.051432 |
Target: 5'- gCCAGGUCcgcgauGCCUGCgGGUucaggguguacGUCAGCCg -3' miRNA: 3'- -GGUUCAGcu----UGGACGgCCG-----------CAGUCGG- -5' |
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11734 | 3' | -55.8 | NC_003215.1 | + | 3748 | 1.15 | 0.000038 |
Target: 5'- aCCAAGUCGAACCUGCCGGCGUCAGCCg -3' miRNA: 3'- -GGUUCAGCUUGGACGGCCGCAGUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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