Results 1 - 6 of 6 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11738 | 5' | -58.1 | NC_003215.1 | + | 6937 | 0.66 | 0.179766 |
Target: 5'- uCGCCGA---UGAAGGCCgCaCAGGCg -3' miRNA: 3'- cGCGGCUaacGCUUCCGGgG-GUCUGg -5' |
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11738 | 5' | -58.1 | NC_003215.1 | + | 5459 | 0.67 | 0.164373 |
Target: 5'- -gGUCGA-UGCGuuGGCCUCCGGGa- -3' miRNA: 3'- cgCGGCUaACGCuuCCGGGGGUCUgg -5' |
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11738 | 5' | -58.1 | NC_003215.1 | + | 1499 | 0.69 | 0.121293 |
Target: 5'- uGCGUgaucugacuggGAUUGCG-AGGCCUgUAGACCa -3' miRNA: 3'- -CGCGg----------CUAACGCuUCCGGGgGUCUGG- -5' |
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11738 | 5' | -58.1 | NC_003215.1 | + | 10984 | 0.69 | 0.11404 |
Target: 5'- aGCGUCG--UGUGA--GCCCCCgaaAGACCa -3' miRNA: 3'- -CGCGGCuaACGCUucCGGGGG---UCUGG- -5' |
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11738 | 5' | -58.1 | NC_003215.1 | + | 11131 | 0.71 | 0.08091 |
Target: 5'- gGUGCUGGUUGUGGucacuugcauuGGGCUCCgCAGAUa -3' miRNA: 3'- -CGCGGCUAACGCU-----------UCCGGGG-GUCUGg -5' |
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11738 | 5' | -58.1 | NC_003215.1 | + | 11136 | 1.14 | 0.000022 |
Target: 5'- aGCGCCGAUUGCGAAGGCCCCCAGACCa -3' miRNA: 3'- -CGCGGCUAACGCUUCCGGGGGUCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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