Results 1 - 4 of 4 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11742 | 3' | -57.5 | NC_003215.1 | + | 5378 | 0.66 | 0.201541 |
Target: 5'- -gUCgCUCCGCCGCGC---GGGAG-GCa -3' miRNA: 3'- uaAG-GAGGUGGCGCGggcUUCUCuCG- -5' |
|||||||
11742 | 3' | -57.5 | NC_003215.1 | + | 5572 | 0.67 | 0.148914 |
Target: 5'- -gUCCgCUGCCaGUGUCCGAGGAGAa- -3' miRNA: 3'- uaAGGaGGUGG-CGCGGGCUUCUCUcg -5' |
|||||||
11742 | 3' | -57.5 | NC_003215.1 | + | 1624 | 0.69 | 0.102427 |
Target: 5'- -gUCC-CCAUCGCGCCggCGGAGAcggGAGUc -3' miRNA: 3'- uaAGGaGGUGGCGCGG--GCUUCU---CUCG- -5' |
|||||||
11742 | 3' | -57.5 | NC_003215.1 | + | 5309 | 1.09 | 0.000052 |
Target: 5'- gAUUCCUCCACCGCGCCCGAAGAGAGCu -3' miRNA: 3'- -UAAGGAGGUGGCGCGGGCUUCUCUCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home