miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11743 5' -55.2 NC_003215.1 + 8458 0.66 0.268449
Target:  5'- -cGCGUACUGC--GCCGACUGcggaGCa -3'
miRNA:   3'- uaCGCAUGGUGguCGGCUGACaug-CG- -5'
11743 5' -55.2 NC_003215.1 + 10789 0.66 0.253304
Target:  5'- aGUGCGUACaGgUAGCC-ACUGUGCa- -3'
miRNA:   3'- -UACGCAUGgUgGUCGGcUGACAUGcg -5'
11743 5' -55.2 NC_003215.1 + 6095 0.66 0.245998
Target:  5'- cUGCGUACagUCGGCUGGugGUACGCa -3'
miRNA:   3'- uACGCAUGguGGUCGGCUgaCAUGCG- -5'
11743 5' -55.2 NC_003215.1 + 4164 0.68 0.199655
Target:  5'- cUGCGUuaACCA-CAGCCGcuuCUGUGCa- -3'
miRNA:   3'- uACGCA--UGGUgGUCGGCu--GACAUGcg -5'
11743 5' -55.2 NC_003215.1 + 6056 1.1 0.000075
Target:  5'- cAUGCGUACCACCAGCCGACUGUACGCa -3'
miRNA:   3'- -UACGCAUGGUGGUCGGCUGACAUGCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.