miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1181 5' -55.1 NC_001132.2 + 15775 0.66 0.958595
Target:  5'- cGUACGUCGCa---GCGCGUacucGUGcCCGa -3'
miRNA:   3'- -CGUGCAGCGggcaUGCGCA----UACaGGC- -5'
1181 5' -55.1 NC_001132.2 + 74172 0.66 0.958595
Target:  5'- cCACGUC-CUCGUACGCGUucgcgaacUCCa -3'
miRNA:   3'- cGUGCAGcGGGCAUGCGCAuac-----AGGc -5'
1181 5' -55.1 NC_001132.2 + 111003 0.66 0.958595
Target:  5'- uCAUGUgGUCCGcgACGUGUGUGauUCCu -3'
miRNA:   3'- cGUGCAgCGGGCa-UGCGCAUAC--AGGc -5'
1181 5' -55.1 NC_001132.2 + 133264 0.67 0.932899
Target:  5'- --cCGUCGCCCGUguuggaauaacACGUGUAcucguUGUCUu -3'
miRNA:   3'- cguGCAGCGGGCA-----------UGCGCAU-----ACAGGc -5'
1181 5' -55.1 NC_001132.2 + 1278 0.67 0.9225
Target:  5'- gGCGC-UCGCCCuacucgacACGUGUgaaGUGUCCGu -3'
miRNA:   3'- -CGUGcAGCGGGca------UGCGCA---UACAGGC- -5'
1181 5' -55.1 NC_001132.2 + 146332 0.68 0.905166
Target:  5'- aGgACG-CGUCCGUagcACGCGUAcagaUGUCUGu -3'
miRNA:   3'- -CgUGCaGCGGGCA---UGCGCAU----ACAGGC- -5'
1181 5' -55.1 NC_001132.2 + 157610 0.69 0.864459
Target:  5'- uCGCGaCGCCCGgACGUaGUuUGUCCGu -3'
miRNA:   3'- cGUGCaGCGGGCaUGCG-CAuACAGGC- -5'
1181 5' -55.1 NC_001132.2 + 127934 0.69 0.841302
Target:  5'- gGUAgGUCGCCCGgcaaGCGCGUAcagGUUa- -3'
miRNA:   3'- -CGUgCAGCGGGCa---UGCGCAUa--CAGgc -5'
1181 5' -55.1 NC_001132.2 + 103312 0.73 0.644883
Target:  5'- uGCACGUC-CCCccACGCGggAUGUCCc -3'
miRNA:   3'- -CGUGCAGcGGGcaUGCGCa-UACAGGc -5'
1181 5' -55.1 NC_001132.2 + 83474 0.74 0.594543
Target:  5'- uGCGCGUCGUCCGUccACGUGUAgGUUUu -3'
miRNA:   3'- -CGUGCAGCGGGCA--UGCGCAUaCAGGc -5'
1181 5' -55.1 NC_001132.2 + 159564 1.12 0.003016
Target:  5'- aGCACGUCGCCCGUACGCGUAUGUCCGg -3'
miRNA:   3'- -CGUGCAGCGGGCAUGCGCAUACAGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.