Results 1 - 9 of 9 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 11843 | 5' | -48 | NC_003266.2 | + | 5719 | 0.66 | 0.941978 |
|
Target: 5'- aCCCGGGccuucgucucagAGUGGUcg-GGUUUCCUCu -3' miRNA: 3'- aGGGCCU------------UCGCUAcuaUUAAAGGAGu -5' |
|||||||
| 11843 | 5' | -48 | NC_003266.2 | + | 13662 | 0.67 | 0.917868 |
|
Target: 5'- --gCGGGAGUGGUGGUGGUaacccgUUCgCUCAc -3' miRNA: 3'- aggGCCUUCGCUACUAUUA------AAG-GAGU- -5' |
|||||||
| 11843 | 5' | -48 | NC_003266.2 | + | 25260 | 0.67 | 0.911024 |
|
Target: 5'- aUCUC-GAAGgGAUGGUAG--UCCUCGg -3' miRNA: 3'- -AGGGcCUUCgCUACUAUUaaAGGAGU- -5' |
|||||||
| 11843 | 5' | -48 | NC_003266.2 | + | 27699 | 0.68 | 0.854343 |
|
Target: 5'- -aCCGGAGGUGAgcuccGAggUCCUCAg -3' miRNA: 3'- agGGCCUUCGCUacua-UUaaAGGAGU- -5' |
|||||||
| 11843 | 5' | -48 | NC_003266.2 | + | 25700 | 0.68 | 0.854343 |
|
Target: 5'- aCCCGG-AGCGGaGAUGGUaUCCg-- -3' miRNA: 3'- aGGGCCuUCGCUaCUAUUAaAGGagu -5' |
|||||||
| 11843 | 5' | -48 | NC_003266.2 | + | 12120 | 0.7 | 0.773475 |
|
Target: 5'- aUCCUGGAGGCcGUGGUGc---CCUCGc -3' miRNA: 3'- -AGGGCCUUCGcUACUAUuaaaGGAGU- -5' |
|||||||
| 11843 | 5' | -48 | NC_003266.2 | + | 4049 | 0.71 | 0.716886 |
|
Target: 5'- gUCCCGGggGUGAaGGUAgcuccAUUgcagggCCUCGu -3' miRNA: 3'- -AGGGCCuuCGCUaCUAU-----UAAa-----GGAGU- -5' |
|||||||
| 11843 | 5' | -48 | NC_003266.2 | + | 4590 | 0.74 | 0.550722 |
|
Target: 5'- aUCCCGGggGCG----UAGUUUcCCUCAc -3' miRNA: 3'- -AGGGCCuuCGCuacuAUUAAA-GGAGU- -5' |
|||||||
| 11843 | 5' | -48 | NC_003266.2 | + | 663 | 1.1 | 0.002867 |
|
Target: 5'- cUCCCGGAAGCGAUGAUAAUUUCCUCAu -3' miRNA: 3'- -AGGGCCUUCGCUACUAUUAAAGGAGU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home