miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11844 3' -52.7 NC_003266.2 + 11315 0.66 0.725349
Target:  5'- --cUGUGGGAccugcuGGAGGCCAuUGUGCa -3'
miRNA:   3'- cgaACGCCCUuac---CCUUCGGU-GUACG- -5'
11844 3' -52.7 NC_003266.2 + 5072 0.66 0.714094
Target:  5'- gGCgacUGCGGGAGUaGGgcGCCAgAcgauggGCg -3'
miRNA:   3'- -CGa--ACGCCCUUAcCCuuCGGUgUa-----CG- -5'
11844 3' -52.7 NC_003266.2 + 10839 0.66 0.712963
Target:  5'- uGCUguUGCGGuggaGggUGGGGGcgcaucuGCCGCAguacgggaUGCa -3'
miRNA:   3'- -CGA--ACGCC----CuuACCCUU-------CGGUGU--------ACG- -5'
11844 3' -52.7 NC_003266.2 + 27480 0.66 0.702748
Target:  5'- ----aCGGcGAuUGGGGAGCcCugGUGCa -3'
miRNA:   3'- cgaacGCC-CUuACCCUUCG-GugUACG- -5'
11844 3' -52.7 NC_003266.2 + 17153 0.68 0.621907
Target:  5'- gGCUgGCGGGAAgcGGGAugcgccGCCACccccaccgGCg -3'
miRNA:   3'- -CGAaCGCCCUUa-CCCUu-----CGGUGua------CG- -5'
11844 3' -52.7 NC_003266.2 + 20848 0.68 0.59872
Target:  5'- -gUUGCuGGAGaagGGGAugcGCCACAUGa -3'
miRNA:   3'- cgAACGcCCUUa--CCCUu--CGGUGUACg -5'
11844 3' -52.7 NC_003266.2 + 15513 0.68 0.574512
Target:  5'- cGCgugcGCGGGcAcuuccgcgcucccUGGGGcgcccucaagGGCCGCGUGCg -3'
miRNA:   3'- -CGaa--CGCCCuU-------------ACCCU----------UCGGUGUACG- -5'
11844 3' -52.7 NC_003266.2 + 22570 0.69 0.541481
Target:  5'- uCUUGUGGGcgaucUGGGAAugCGCAUGCa -3'
miRNA:   3'- cGAACGCCCuu---ACCCUUcgGUGUACG- -5'
11844 3' -52.7 NC_003266.2 + 23034 0.69 0.541481
Target:  5'- uUUUGCGGGGuuucuuuuUGGGcGGCUGC-UGCg -3'
miRNA:   3'- cGAACGCCCUu-------ACCCuUCGGUGuACG- -5'
11844 3' -52.7 NC_003266.2 + 12019 0.69 0.530233
Target:  5'- cGCaUUGCGGGAucaGGAGGUgGCuguUGCu -3'
miRNA:   3'- -CG-AACGCCCUuacCCUUCGgUGu--ACG- -5'
11844 3' -52.7 NC_003266.2 + 2936 0.69 0.519072
Target:  5'- uGCUgaccUGCGccGGUGGGAacAGUCAUAUGCu -3'
miRNA:   3'- -CGA----ACGCccUUACCCU--UCGGUGUACG- -5'
11844 3' -52.7 NC_003266.2 + 16851 0.71 0.403844
Target:  5'- aCUUGCGccGGggUuuucGGGgcGCCGCcgGCa -3'
miRNA:   3'- cGAACGC--CCuuA----CCCuuCGGUGuaCG- -5'
11844 3' -52.7 NC_003266.2 + 3040 1.15 0.000375
Target:  5'- gGCUUGCGGGAAUGGGAAGCCACAUGCa -3'
miRNA:   3'- -CGAACGCCCUUACCCUUCGGUGUACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.