miRNA: 3'- gaGGGAGU-----UUCCUCGGcaaaGGCGag -5'
miRNA: 3'- -GAGGGAg---UUUCCUCGGcaaaGGCGAG- -5'
miRNA: 3'- gaGGGAGUU----UCCUCGg--CAAAGGcGAG- -5'
miRNA: 3'- -GAGGGAGUUUCCUCGGCAAAGGCGAG- -5'
Results 1 - 4 of 4 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 11845 | 5' | -54.5 | NC_003266.2 | + | 23681 | 0.66 | 0.618823 |
|
Target: 5'- -cCCCUCAgcgugGAGGAGCUcag-CCGCg- -3' miRNA: 3'- gaGGGAGU-----UUCCUCGGcaaaGGCGag -5' |
|||||||
| 11845 | 5' | -54.5 | NC_003266.2 | + | 4819 | 0.66 | 0.607357 |
|
Target: 5'- cCUCCCUaagaAGGGGGGCCacc-UCGUUCa -3' miRNA: 3'- -GAGGGAg---UUUCCUCGGcaaaGGCGAG- -5' |
|||||||
| 11845 | 5' | -54.5 | NC_003266.2 | + | 4583 | 0.71 | 0.357269 |
|
Target: 5'- -aCCCUCAAucccGGGGGCguaGUUUCC-CUCa -3' miRNA: 3'- gaGGGAGUU----UCCUCGg--CAAAGGcGAG- -5' |
|||||||
| 11845 | 5' | -54.5 | NC_003266.2 | + | 3501 | 1.11 | 0.00049 |
|
Target: 5'- cCUCCCUCAAAGGAGCCGUUUCCGCUCa -3' miRNA: 3'- -GAGGGAGUUUCCUCGGCAAAGGCGAG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home