miRNA display CGI

Results 1 - 10 of 10 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
11846	3'	-61	NC_003266.2	+	25351	0.66	0.306977
	Target:  5'- aGCUUGCaauUGGGcCAGgaUCGCCCccuGGGUg -3' miRNA:   3'- gUGGACG---ACCCaGUCg-AGCGGG---UCCG- -5'
11846	3'	-61	NC_003266.2	+	8418	0.66	0.299431
	Target:  5'- gCGCCggGCgguagGGG-CGGCUCGggaCCCggAGGCa -3' miRNA:   3'- -GUGGa-CGa----CCCaGUCGAGC---GGG--UCCG- -5'
11846	3'	-61	NC_003266.2	+	18018	0.66	0.299431
	Target:  5'- gGCCcGCgcgcgaccGGG--GGCUCGCCCucAGGCg -3' miRNA:   3'- gUGGaCGa-------CCCagUCGAGCGGG--UCCG- -5'
11846	3'	-61	NC_003266.2	+	2989	0.67	0.266569
	Target:  5'- cCACCgGCgcaGGUCAgcaucugguagccgcGCUCGUCCgAGGCu -3' miRNA:   3'- -GUGGaCGac-CCAGU---------------CGAGCGGG-UCCG- -5'
11846	3'	-61	NC_003266.2	+	3046	0.67	0.263854
	Target:  5'- uGCau-CUGGG--GGCUCGCCgAGGCa -3' miRNA:   3'- gUGgacGACCCagUCGAGCGGgUCCG- -5'
11846	3'	-61	NC_003266.2	+	26657	0.67	0.263854
	Target:  5'- cCGCCaGCUGGacaccugaguuaGUCAGCUggacuucgGCCUGGGCg -3' miRNA:   3'- -GUGGaCGACC------------CAGUCGAg-------CGGGUCCG- -5'
11846	3'	-61	NC_003266.2	+	15439	0.69	0.187352
	Target:  5'- aCACCgGUUGGgGUCuGCgcgCGCCCAG-Ca -3' miRNA:   3'- -GUGGaCGACC-CAGuCGa--GCGGGUCcG- -5'
11846	3'	-61	NC_003266.2	+	9661	0.7	0.154804
	Target:  5'- gGCUUGCUGgaugcgcagacGGUCGGCcaUGcCCCAGGCg -3' miRNA:   3'- gUGGACGAC-----------CCAGUCGa-GC-GGGUCCG- -5'
11846	3'	-61	NC_003266.2	+	22249	0.73	0.098871
	Target:  5'- aCGCCUGCUGGGccUUGGCUC-CCUcGGUg -3' miRNA:   3'- -GUGGACGACCC--AGUCGAGcGGGuCCG- -5'
11846	3'	-61	NC_003266.2	+	3848	1.11	9.4e-05
	Target:  5'- cCACCUGCUGGGUCAGCUCGCCCAGGCg -3' miRNA:   3'- -GUGGACGACCCAGUCGAGCGGGUCCG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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