miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11846 5' -57.7 NC_003266.2 + 13497 0.66 0.435917
Target:  5'- gGGGaaguucuUCUCccGCUcGGGCC-UCAACAGCg -3'
miRNA:   3'- -UCC-------GGAGcuCGA-CCCGGuAGUUGUCG- -5'
11846 5' -57.7 NC_003266.2 + 21068 0.67 0.388989
Target:  5'- cGGGCUccggCGAGCaggagcucaGGGCCAUCAuCcGCg -3'
miRNA:   3'- -UCCGGa---GCUCGa--------CCCGGUAGUuGuCG- -5'
11846 5' -57.7 NC_003266.2 + 23019 0.67 0.361941
Target:  5'- gAGGCCgaggagGAGCUGgcGGCCGUgGGCuucAGCu -3'
miRNA:   3'- -UCCGGag----CUCGAC--CCGGUAgUUG---UCG- -5'
11846 5' -57.7 NC_003266.2 + 18068 0.67 0.361941
Target:  5'- cGGUCgcgcgCGGGCcacGGCCAcCGGCGGCa -3'
miRNA:   3'- uCCGGa----GCUCGac-CCGGUaGUUGUCG- -5'
11846 5' -57.7 NC_003266.2 + 11725 0.68 0.336227
Target:  5'- cAGGCggcgCGAGCUGaGCgAUCAGgAGCu -3'
miRNA:   3'- -UCCGga--GCUCGACcCGgUAGUUgUCG- -5'
11846 5' -57.7 NC_003266.2 + 24592 0.69 0.296394
Target:  5'- cGGGCCUCcccGCgcaGGGUgGUguGCAGCa -3'
miRNA:   3'- -UCCGGAGcu-CGa--CCCGgUAguUGUCG- -5'
11846 5' -57.7 NC_003266.2 + 23823 0.69 0.288881
Target:  5'- gAGGCg-UGGGUUGGGCUcgCAGguGCc -3'
miRNA:   3'- -UCCGgaGCUCGACCCGGuaGUUguCG- -5'
11846 5' -57.7 NC_003266.2 + 10876 0.69 0.281518
Target:  5'- cGGCCgccgUGAGCgGGGCCGggCAGaguCAGUa -3'
miRNA:   3'- uCCGGa---GCUCGaCCCGGUa-GUU---GUCG- -5'
11846 5' -57.7 NC_003266.2 + 13360 0.71 0.221859
Target:  5'- cGGCCUCGGGCaccGCUG-CGGCAGCa -3'
miRNA:   3'- uCCGGAGCUCGaccCGGUaGUUGUCG- -5'
11846 5' -57.7 NC_003266.2 + 12120 0.72 0.178197
Target:  5'- aAGGCUUCGGGgUugcGGGUCGUCAGC-GCc -3'
miRNA:   3'- -UCCGGAGCUCgA---CCCGGUAGUUGuCG- -5'
11846 5' -57.7 NC_003266.2 + 11489 0.73 0.146429
Target:  5'- cGGcCCUCGGGCUcGGUgAuauUCAGCAGCg -3'
miRNA:   3'- uCC-GGAGCUCGAcCCGgU---AGUUGUCG- -5'
11846 5' -57.7 NC_003266.2 + 3813 1.12 0.000169
Target:  5'- aAGGCCUCGAGCUGGGCCAUCAACAGCa -3'
miRNA:   3'- -UCCGGAGCUCGACCCGGUAGUUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.