miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11849 5' -58.5 NC_003266.2 + 25337 0.66 0.448791
Target:  5'- aUUCUUgcUGAaaaAGGGCCGCGGgGUCu -3'
miRNA:   3'- -AGGAGauGCUgc-UCCUGGCGCCgCAG- -5'
11849 5' -58.5 NC_003266.2 + 25956 0.66 0.429363
Target:  5'- aUCCacagCggcgGCGGCggcagguggacuGAGGAUCGCGGCGa- -3'
miRNA:   3'- -AGGa---Ga---UGCUG------------CUCCUGGCGCCGCag -5'
11849 5' -58.5 NC_003266.2 + 22730 0.67 0.401172
Target:  5'- aCCUgUACaucaACGAGGAgcaCCGCGGCa-- -3'
miRNA:   3'- aGGAgAUGc---UGCUCCU---GGCGCCGcag -5'
11849 5' -58.5 NC_003266.2 + 23045 0.67 0.383045
Target:  5'- uUCUUUUugGGCGGcuGCUGCGGCGg- -3'
miRNA:   3'- -AGGAGAugCUGCUccUGGCGCCGCag -5'
11849 5' -58.5 NC_003266.2 + 17898 0.67 0.383045
Target:  5'- cUCCUCgUACGGgGGcGGuucguCCGUGuGCGUCa -3'
miRNA:   3'- -AGGAG-AUGCUgCU-CCu----GGCGC-CGCAG- -5'
11849 5' -58.5 NC_003266.2 + 11922 0.68 0.356895
Target:  5'- cUCUUCUACGuaaGGGACCGCcGCGg- -3'
miRNA:   3'- -AGGAGAUGCugcUCCUGGCGcCGCag -5'
11849 5' -58.5 NC_003266.2 + 15535 0.68 0.332024
Target:  5'- cUCC-CUGgGGCGcccucaAGGGCCGCGuGCGgUCg -3'
miRNA:   3'- -AGGaGAUgCUGC------UCCUGGCGC-CGC-AG- -5'
11849 5' -58.5 NC_003266.2 + 15396 0.68 0.324022
Target:  5'- gCCUUguaGACGuaGGGGCagguGCGGCGUCu -3'
miRNA:   3'- aGGAGaugCUGC--UCCUGg---CGCCGCAG- -5'
11849 5' -58.5 NC_003266.2 + 16999 0.69 0.293457
Target:  5'- -gCUgUGCGGCGAcGACgGCGGCGg- -3'
miRNA:   3'- agGAgAUGCUGCUcCUGgCGCCGCag -5'
11849 5' -58.5 NC_003266.2 + 14743 0.69 0.272043
Target:  5'- gCCUCUAC--CGAGGuCCGgGGCGa- -3'
miRNA:   3'- aGGAGAUGcuGCUCCuGGCgCCGCag -5'
11849 5' -58.5 NC_003266.2 + 23128 0.7 0.245467
Target:  5'- uUCUUCUugGucCGAGGcCaCGCGGCGg- -3'
miRNA:   3'- -AGGAGAugCu-GCUCCuG-GCGCCGCag -5'
11849 5' -58.5 NC_003266.2 + 5689 1.09 0.000333
Target:  5'- uUCCUCUACGACGAGGACCGCGGCGUCc -3'
miRNA:   3'- -AGGAGAUGCUGCUCCUGGCGCCGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.