miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1185 5' -51.7 NC_001132.2 + 99900 0.67 0.979731
Target:  5'- cACCAUCUGuuAcAG-CCUGGguauAUCGCCa -3'
miRNA:   3'- -UGGUAGACucUaUCaGGACU----UGGCGG- -5'
1185 5' -51.7 NC_001132.2 + 9943 0.68 0.964974
Target:  5'- uCCAUCUGgcgacguguuuaggGGAU-GUCCcagGAACCGCa -3'
miRNA:   3'- uGGUAGAC--------------UCUAuCAGGa--CUUGGCGg -5'
1185 5' -51.7 NC_001132.2 + 118330 0.74 0.75247
Target:  5'- uACCGUUUGAGAUGG-CUUGuACCGUa -3'
miRNA:   3'- -UGGUAGACUCUAUCaGGACuUGGCGg -5'
1185 5' -51.7 NC_001132.2 + 158577 1.13 0.004259
Target:  5'- gACCAUCUGAGAUAGUCCUGAACCGCCa -3'
miRNA:   3'- -UGGUAGACUCUAUCAGGACUUGGCGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.