miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11850 5' -57.9 NC_003266.2 + 8991 0.66 0.444179
Target:  5'- aUUGCCAccacGCUcaacuaCCUCUaCCAGCGCCuCUg -3'
miRNA:   3'- -AGCGGUu---CGA------GGAGA-GGUUGCGG-GAg -5'
11850 5' -57.9 NC_003266.2 + 31167 0.67 0.368596
Target:  5'- aUCGCCucuccuacGAGCUCCUgCagCAGCGCCa-- -3'
miRNA:   3'- -AGCGG--------UUCGAGGA-GagGUUGCGGgag -5'
11850 5' -57.9 NC_003266.2 + 5457 0.68 0.342617
Target:  5'- aCGCCcccGAGUccgucuUCCUCgcccCCAagcucuACGCCCUCa -3'
miRNA:   3'- aGCGG---UUCG------AGGAGa---GGU------UGCGGGAG- -5'
11850 5' -57.9 NC_003266.2 + 15375 0.68 0.334256
Target:  5'- gCGCCGcGCgUCCUCUCgAGcCGCaCCUUc -3'
miRNA:   3'- aGCGGUuCG-AGGAGAGgUU-GCG-GGAG- -5'
11850 5' -57.9 NC_003266.2 + 20246 0.68 0.334256
Target:  5'- cUCGCUggGCUCCgggUUCGAC-CCCUa -3'
miRNA:   3'- -AGCGGuuCGAGGag-AGGUUGcGGGAg -5'
11850 5' -57.9 NC_003266.2 + 15631 0.68 0.326045
Target:  5'- cCGCCGcGC-CCgUCUCCAccguggACGCCgUCa -3'
miRNA:   3'- aGCGGUuCGaGG-AGAGGU------UGCGGgAG- -5'
11850 5' -57.9 NC_003266.2 + 9010 0.68 0.310075
Target:  5'- gUCGCCcaGGGCUUCcaagcgCUCCAugGCCUc- -3'
miRNA:   3'- -AGCGG--UUCGAGGa-----GAGGUugCGGGag -5'
11850 5' -57.9 NC_003266.2 + 8837 0.69 0.27994
Target:  5'- aCGCCuucucgcAGCUCaugggccgcaUCUCCAACGaCCUCg -3'
miRNA:   3'- aGCGGu------UCGAGg---------AGAGGUUGCgGGAG- -5'
11850 5' -57.9 NC_003266.2 + 25048 0.69 0.27278
Target:  5'- cUCGagCAGGC-CCUCgcugCUGACGUCCUCg -3'
miRNA:   3'- -AGCg-GUUCGaGGAGa---GGUUGCGGGAG- -5'
11850 5' -57.9 NC_003266.2 + 6721 0.69 0.265767
Target:  5'- -aGCCGGGCUCCUCgCC----CCCUCg -3'
miRNA:   3'- agCGGUUCGAGGAGaGGuugcGGGAG- -5'
11850 5' -57.9 NC_003266.2 + 4751 0.7 0.245605
Target:  5'- cCGCCcAGCUCaUCUCCccCGCCC-Cg -3'
miRNA:   3'- aGCGGuUCGAGgAGAGGuuGCGGGaG- -5'
11850 5' -57.9 NC_003266.2 + 15516 0.7 0.23288
Target:  5'- gUGCgCGGGCacuUCCgcgCUCCcuggGGCGCCCUCa -3'
miRNA:   3'- aGCG-GUUCG---AGGa--GAGG----UUGCGGGAG- -5'
11850 5' -57.9 NC_003266.2 + 22962 0.72 0.177362
Target:  5'- cCGCC-AGCUCCuccucggccUCUCUuuCGUCCUCg -3'
miRNA:   3'- aGCGGuUCGAGG---------AGAGGuuGCGGGAG- -5'
11850 5' -57.9 NC_003266.2 + 6885 0.75 0.103428
Target:  5'- gUCGCCAAGCUgCaagaCUCCuACGCCCa- -3'
miRNA:   3'- -AGCGGUUCGAgGa---GAGGuUGCGGGag -5'
11850 5' -57.9 NC_003266.2 + 6156 1.1 0.000248
Target:  5'- aUCGCCAAGCUCCUCUCCAACGCCCUCu -3'
miRNA:   3'- -AGCGGUUCGAGGAGAGGUUGCGGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.