miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11851 3' -65.1 NC_003266.2 + 11151 0.72 0.060053
Target:  5'- aCGAGCugacggggaucagCCCUGCGCGcGCGcacGUGGCCGc -3'
miRNA:   3'- -GCUCG-------------GGGACGCGC-CGCuc-CACCGGU- -5'
11851 3' -65.1 NC_003266.2 + 15764 0.66 0.184395
Target:  5'- gCGAGCCUugCUGCGCagggccaGGCGcacGGGacgcagGGCCAu -3'
miRNA:   3'- -GCUCGGG--GACGCG-------CCGC---UCCa-----CCGGU- -5'
11851 3' -65.1 NC_003266.2 + 14129 0.66 0.170851
Target:  5'- aCGAGCgCU--CGCGGUGGGGcGGUCAg -3'
miRNA:   3'- -GCUCGgGGacGCGCCGCUCCaCCGGU- -5'
11851 3' -65.1 NC_003266.2 + 23052 0.66 0.170851
Target:  5'- uGGGCggCUGCuGCGGCGGcGGUGGUUg -3'
miRNA:   3'- gCUCGggGACG-CGCCGCU-CCACCGGu -5'
11851 3' -65.1 NC_003266.2 + 8095 0.67 0.16639
Target:  5'- aCGAGCCC--GCGCGG-GAGGcaGGuCCAg -3'
miRNA:   3'- -GCUCGGGgaCGCGCCgCUCCa-CC-GGU- -5'
11851 3' -65.1 NC_003266.2 + 24524 0.68 0.141764
Target:  5'- aCGuGCugcacaccaCCCUGCGCGGgGAGGcccGCCGc -3'
miRNA:   3'- -GCuCG---------GGGACGCGCCgCUCCac-CGGU- -5'
11851 3' -65.1 NC_003266.2 + 17995 0.68 0.134325
Target:  5'- -aAGCCCCUGcCGcCGGUGGccGUGGCCc -3'
miRNA:   3'- gcUCGGGGAC-GC-GCCGCUc-CACCGGu -5'
11851 3' -65.1 NC_003266.2 + 9818 0.68 0.132164
Target:  5'- aCGAGCgCCaggucagcgacgacGCGCucGGCGAGGaUGGCCu -3'
miRNA:   3'- -GCUCGgGGa-------------CGCG--CCGCUCC-ACCGGu -5'
11851 3' -65.1 NC_003266.2 + 4450 0.68 0.127247
Target:  5'- uGGGCCCgUGgGCGGCGGcuUGGgCAa -3'
miRNA:   3'- gCUCGGGgACgCGCCGCUccACCgGU- -5'
11851 3' -65.1 NC_003266.2 + 23190 0.69 0.105111
Target:  5'- aCGGGCUCUcGCGgccCGGCG-GGUGGCUg -3'
miRNA:   3'- -GCUCGGGGaCGC---GCCGCuCCACCGGu -5'
11851 3' -65.1 NC_003266.2 + 6353 1.07 0.00008
Target:  5'- aCGAGCCCCUGCGCGGCGAGGUGGCCAc -3'
miRNA:   3'- -GCUCGGGGACGCGCCGCUCCACCGGU- -5'
11851 3' -65.1 NC_003266.2 + 18077 0.71 0.077506
Target:  5'- gCGAGCCCCcgGuCGCGcGCGGGccacGGCCAc -3'
miRNA:   3'- -GCUCGGGGa-C-GCGC-CGCUCca--CCGGU- -5'
11851 3' -65.1 NC_003266.2 + 26413 0.69 0.10226
Target:  5'- gGAGUagUCCUGgGCGGCGccGGcGGCCAg -3'
miRNA:   3'- gCUCG--GGGACgCGCCGCu-CCaCCGGU- -5'
11851 3' -65.1 NC_003266.2 + 13045 0.66 0.171303
Target:  5'- uGGGCCCauguugCgcgcggucaugucgaGCGCGGCGcuggGGGUGGCCc -3'
miRNA:   3'- gCUCGGG------Ga--------------CGCGCCGC----UCCACCGGu -5'
11851 3' -65.1 NC_003266.2 + 33785 0.66 0.180093
Target:  5'- gGGGUCCCUGCGCugcauggcgGGCGGgacGGUacuuGCCAu -3'
miRNA:   3'- gCUCGGGGACGCG---------CCGCU---CCAc---CGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.