miRNA display CGI


Results 21 - 35 of 35 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11853 5' -60.8 NC_003266.2 + 20668 0.7 0.181689
Target:  5'- -gAUACCUcgcgCCCacuaUGCGcCAGGGCCaGCCCu -3'
miRNA:   3'- cgUGUGGA----GGG----ACGC-GUUCCGG-CGGG- -5'
11853 5' -60.8 NC_003266.2 + 31059 0.7 0.158661
Target:  5'- aCGCugCUCCgaGC-CGcGGCCGUCCa -3'
miRNA:   3'- cGUGugGAGGgaCGcGUuCCGGCGGG- -5'
11853 5' -60.8 NC_003266.2 + 9325 0.71 0.154384
Target:  5'- gGCGCGCCcgUCCU-CGCGGGGUCGCa- -3'
miRNA:   3'- -CGUGUGGa-GGGAcGCGUUCCGGCGgg -5'
11853 5' -60.8 NC_003266.2 + 6558 0.71 0.142172
Target:  5'- gGCACGCCccuuagUCCCUacgaGCGCGcgcuGGCCGUgCg -3'
miRNA:   3'- -CGUGUGG------AGGGA----CGCGUu---CCGGCGgG- -5'
11853 5' -60.8 NC_003266.2 + 16424 0.71 0.134529
Target:  5'- aGCAaACUcgCCCagGCGCucGGCCGCCUg -3'
miRNA:   3'- -CGUgUGGa-GGGa-CGCGuuCCGGCGGG- -5'
11853 5' -60.8 NC_003266.2 + 15877 0.72 0.123771
Target:  5'- -gGCGCCUgaagCC-GCGCGucuGGCCGCCCu -3'
miRNA:   3'- cgUGUGGAg---GGaCGCGUu--CCGGCGGG- -5'
11853 5' -60.8 NC_003266.2 + 17010 0.73 0.110667
Target:  5'- cGCGCGCCUcugaCCCUGcCGCG-GGCgCGCUa -3'
miRNA:   3'- -CGUGUGGA----GGGAC-GCGUuCCG-GCGGg -5'
11853 5' -60.8 NC_003266.2 + 20167 0.73 0.104613
Target:  5'- uGCcCAUCUccaucCCCUcGCGCAacuGGGCCGCCUu -3'
miRNA:   3'- -CGuGUGGA-----GGGA-CGCGU---UCCGGCGGG- -5'
11853 5' -60.8 NC_003266.2 + 21222 0.73 0.096113
Target:  5'- cGCAgGCCaCCUUGUGCGGGGCCaugaauCCCg -3'
miRNA:   3'- -CGUgUGGaGGGACGCGUUCCGGc-----GGG- -5'
11853 5' -60.8 NC_003266.2 + 9452 0.74 0.083383
Target:  5'- aGCGCACuCUCCCUGCccaaCGGGGaCCcCCCg -3'
miRNA:   3'- -CGUGUG-GAGGGACGc---GUUCC-GGcGGG- -5'
11853 5' -60.8 NC_003266.2 + 24594 0.75 0.066301
Target:  5'- gGCGgGCCUCCCcGCGCAGGGUgGUg- -3'
miRNA:   3'- -CGUgUGGAGGGaCGCGUUCCGgCGgg -5'
11853 5' -60.8 NC_003266.2 + 15761 0.76 0.059078
Target:  5'- gGCGCgaGCCUUgCUGCGCAGGGCCagGCgCa -3'
miRNA:   3'- -CGUG--UGGAGgGACGCGUUCCGG--CGgG- -5'
11853 5' -60.8 NC_003266.2 + 15829 0.8 0.029349
Target:  5'- cGUGCGCCUggCCCUGCGCAgcaAGGCuCGCgCCg -3'
miRNA:   3'- -CGUGUGGA--GGGACGCGU---UCCG-GCG-GG- -5'
11853 5' -60.8 NC_003266.2 + 24530 0.87 0.007998
Target:  5'- uGCACACCaCCCUGCGCGGGGagGCCCg -3'
miRNA:   3'- -CGUGUGGaGGGACGCGUUCCggCGGG- -5'
11853 5' -60.8 NC_003266.2 + 7150 1.13 0.00007
Target:  5'- cGCACACCUCCCUGCGCAAGGCCGCCCa -3'
miRNA:   3'- -CGUGUGGAGGGACGCGUUCCGGCGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.