Results 21 - 25 of 25 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11857 | 5' | -64.4 | NC_003266.2 | + | 23193 | 0.66 | 0.205157 |
Target: 5'- gGCUCUCGCgGCCcGGCGgGUGGCUGg- -3' miRNA: 3'- -CGGGGGCGgUGGcUCGC-UACCGGCga -5' |
|||||||
11857 | 5' | -64.4 | NC_003266.2 | + | 16936 | 0.66 | 0.216002 |
Target: 5'- aCCaCCCGCCGCCGu-CGuc-GCCGCa -3' miRNA: 3'- cGG-GGGCGGUGGCucGCuacCGGCGa -5' |
|||||||
11857 | 5' | -64.4 | NC_003266.2 | + | 15695 | 0.66 | 0.216002 |
Target: 5'- cGCCCgCGCCAa-GAGcCGgcGGCgGCg -3' miRNA: 3'- -CGGGgGCGGUggCUC-GCuaCCGgCGa -5' |
|||||||
11857 | 5' | -64.4 | NC_003266.2 | + | 21180 | 0.66 | 0.221041 |
Target: 5'- gGCCUgCGCCAUCGucaacacGGCc--GGCCGCg -3' miRNA: 3'- -CGGGgGCGGUGGC-------UCGcuaCCGGCGa -5' |
|||||||
11857 | 5' | -64.4 | NC_003266.2 | + | 7993 | 0.66 | 0.221606 |
Target: 5'- uGCaUCCCGUgcagcgUugCGAGCacuGUGGCCGCUu -3' miRNA: 3'- -CG-GGGGCG------GugGCUCGc--UACCGGCGA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home