miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11859 3' -63.4 NC_003266.2 + 7413 0.66 0.250829
Target:  5'- cCuuGACGUGGGGcaGUuucuugagcuccucGUAGGUGAGCu- -3'
miRNA:   3'- -GggCUGCGCCCC--CG--------------CGUCCACUCGcu -5'
11859 3' -63.4 NC_003266.2 + 23403 0.66 0.240371
Target:  5'- gUCGGCgGUGGGGGCagaugGCgAGGUuGGCGAc -3'
miRNA:   3'- gGGCUG-CGCCCCCG-----CG-UCCAcUCGCU- -5'
11859 3' -63.4 NC_003266.2 + 5305 0.68 0.190944
Target:  5'- gCCGACGCacaGGGCGCcgaucGG-GAGCGGu -3'
miRNA:   3'- gGGCUGCGcc-CCCGCGu----CCaCUCGCU- -5'
11859 3' -63.4 NC_003266.2 + 9553 0.68 0.18604
Target:  5'- uUCUGGCgGCGguGGGGUGUGGGcggGGGCGAu -3'
miRNA:   3'- -GGGCUG-CGC--CCCCGCGUCCa--CUCGCU- -5'
11859 3' -63.4 NC_003266.2 + 15602 0.68 0.180774
Target:  5'- aCCGcACGCGGcccuugaGGGCGCcccAGG-GAGCGc -3'
miRNA:   3'- gGGC-UGCGCC-------CCCGCG---UCCaCUCGCu -5'
11859 3' -63.4 NC_003266.2 + 18026 0.69 0.163154
Target:  5'- aCUGugGa-GGGGCGgGGaGUGGGCGGa -3'
miRNA:   3'- gGGCugCgcCCCCGCgUC-CACUCGCU- -5'
11859 3' -63.4 NC_003266.2 + 30512 0.69 0.146702
Target:  5'- aCUgGGgGUGGuGGCGCAGGUaGGCGAu -3'
miRNA:   3'- -GGgCUgCGCCcCCGCGUCCAcUCGCU- -5'
11859 3' -63.4 NC_003266.2 + 5407 0.7 0.130715
Target:  5'- aCgGACuCGGGGGCGUAGGcguccgcgccgcagUGGGCGc -3'
miRNA:   3'- gGgCUGcGCCCCCGCGUCC--------------ACUCGCu -5'
11859 3' -63.4 NC_003266.2 + 22431 0.71 0.111999
Target:  5'- aCCCaGAacCGCuGGGGGCGCAGcGUGGuGCa- -3'
miRNA:   3'- -GGG-CU--GCG-CCCCCGCGUC-CACU-CGcu -5'
11859 3' -63.4 NC_003266.2 + 5834 0.71 0.108986
Target:  5'- uCCCGGC-CGGGGGgGUauaaaAGG-GGGCGGg -3'
miRNA:   3'- -GGGCUGcGCCCCCgCG-----UCCaCUCGCU- -5'
11859 3' -63.4 NC_003266.2 + 10110 0.71 0.103185
Target:  5'- cUCgGugGCGGGGGCGCcgggcgcuAGGUccucGAGCa- -3'
miRNA:   3'- -GGgCugCGCCCCCGCG--------UCCA----CUCGcu -5'
11859 3' -63.4 NC_003266.2 + 15678 0.71 0.103185
Target:  5'- aCgGGCGCGGcGGCGgGGGUGuaguuGCGAg -3'
miRNA:   3'- gGgCUGCGCCcCCGCgUCCACu----CGCU- -5'
11859 3' -63.4 NC_003266.2 + 15277 0.72 0.097408
Target:  5'- aCUGACGgugguaaUGGuGGGCGCGGGcGGGCGGa -3'
miRNA:   3'- gGGCUGC-------GCC-CCCGCGUCCaCUCGCU- -5'
11859 3' -63.4 NC_003266.2 + 13747 1.09 0.000102
Target:  5'- gCCCGACGCGGGGGCGCAGGUGAGCGAa -3'
miRNA:   3'- -GGGCUGCGCCCCCGCGUCCACUCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.