miRNA display CGI


Results 1 - 20 of 25 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11859 5' -57.4 NC_003266.2 + 14736 0.66 0.472823
Target:  5'- aGCCACCGC-CUCuaCCGAgGUCCGGg -3'
miRNA:   3'- gUGGUGGUGaGGGcgGGUU-CAGGUUg -5'
11859 5' -57.4 NC_003266.2 + 4872 0.66 0.462548
Target:  5'- uCGCgCACCAgUUCCGCCagGAGUcgcucuccgcCCAGCg -3'
miRNA:   3'- -GUG-GUGGUgAGGGCGGg-UUCA----------GGUUG- -5'
11859 5' -57.4 NC_003266.2 + 10822 0.66 0.452392
Target:  5'- aGCCGgCGCUUCUGCCUccGccCCAGCa -3'
miRNA:   3'- gUGGUgGUGAGGGCGGGuuCa-GGUUG- -5'
11859 5' -57.4 NC_003266.2 + 6293 0.66 0.452392
Target:  5'- gGCCACC--UCgCCGCgCAggggcucguuGGUCCAGCa -3'
miRNA:   3'- gUGGUGGugAG-GGCGgGU----------UCAGGUUG- -5'
11859 5' -57.4 NC_003266.2 + 27150 0.66 0.449369
Target:  5'- -cCCACCuGCUUCguaucuucagccagCGCCCGauccuGGUCCAGCg -3'
miRNA:   3'- guGGUGG-UGAGG--------------GCGGGU-----UCAGGUUG- -5'
11859 5' -57.4 NC_003266.2 + 10196 0.67 0.422677
Target:  5'- cUACCACCGCaCCaUGCUCGAGgacCUAGCg -3'
miRNA:   3'- -GUGGUGGUGaGG-GCGGGUUCa--GGUUG- -5'
11859 5' -57.4 NC_003266.2 + 33338 0.67 0.422677
Target:  5'- aGCUGCUACUCaagggGUCCGGGUCCAGg -3'
miRNA:   3'- gUGGUGGUGAGgg---CGGGUUCAGGUUg -5'
11859 5' -57.4 NC_003266.2 + 30848 0.67 0.422677
Target:  5'- gCACCACCAC-CacaGCCUAGGccCCAAUa -3'
miRNA:   3'- -GUGGUGGUGaGgg-CGGGUUCa-GGUUG- -5'
11859 5' -57.4 NC_003266.2 + 4281 0.67 0.413035
Target:  5'- uUACCGCCcagaUCCCGCCUggGaUUCAu- -3'
miRNA:   3'- -GUGGUGGug--AGGGCGGGuuC-AGGUug -5'
11859 5' -57.4 NC_003266.2 + 26351 0.67 0.40353
Target:  5'- gGCCGCCgGCg-CCGCCCAGGacuacUCCAcccGCa -3'
miRNA:   3'- gUGGUGG-UGagGGCGGGUUC-----AGGU---UG- -5'
11859 5' -57.4 NC_003266.2 + 11139 0.67 0.40353
Target:  5'- gCGCCGCaGCUCCCGCCCcgcGUggaAACg -3'
miRNA:   3'- -GUGGUGgUGAGGGCGGGuu-CAgg-UUG- -5'
11859 5' -57.4 NC_003266.2 + 8153 0.67 0.40353
Target:  5'- gACCugC-CUCCCGCgCGGGcucgUCAGCa -3'
miRNA:   3'- gUGGugGuGAGGGCGgGUUCa---GGUUG- -5'
11859 5' -57.4 NC_003266.2 + 23728 0.67 0.394164
Target:  5'- -cUCGCCGCgcgugCCC-CCCAAGcgCCAGCc -3'
miRNA:   3'- guGGUGGUGa----GGGcGGGUUCa-GGUUG- -5'
11859 5' -57.4 NC_003266.2 + 15037 0.67 0.394164
Target:  5'- uCACCuuCCGCUCCaCGCgUCAAGUUagCAACu -3'
miRNA:   3'- -GUGGu-GGUGAGG-GCG-GGUUCAG--GUUG- -5'
11859 5' -57.4 NC_003266.2 + 30776 0.67 0.384941
Target:  5'- aACgCACCcgaggcgcucugGCUCCCGCCUGAucCCGACa -3'
miRNA:   3'- gUG-GUGG------------UGAGGGCGGGUUcaGGUUG- -5'
11859 5' -57.4 NC_003266.2 + 15919 0.67 0.384941
Target:  5'- uGCCGCCGCcguggCCgCGCgucuCCGAGUCCuGCc -3'
miRNA:   3'- gUGGUGGUGa----GG-GCG----GGUUCAGGuUG- -5'
11859 5' -57.4 NC_003266.2 + 26555 0.68 0.348648
Target:  5'- gACCguACUACUUCCgcgagacgcccagGCCgAAGUCCAGCu -3'
miRNA:   3'- gUGG--UGGUGAGGG-------------CGGgUUCAGGUUG- -5'
11859 5' -57.4 NC_003266.2 + 7403 0.68 0.348648
Target:  5'- aACgGCUucgacgagaucguGCUCgCCGCCCAGGUCauCAACa -3'
miRNA:   3'- gUGgUGG-------------UGAG-GGCGGGUUCAG--GUUG- -5'
11859 5' -57.4 NC_003266.2 + 8423 0.69 0.316451
Target:  5'- aGCCaaACCGCUUCCGCCCg---CCAAg -3'
miRNA:   3'- gUGG--UGGUGAGGGCGGGuucaGGUUg -5'
11859 5' -57.4 NC_003266.2 + 3566 0.69 0.316451
Target:  5'- cCAUCACauuuugacgCACUCCCGCCCAGGaggggaGACg -3'
miRNA:   3'- -GUGGUG---------GUGAGGGCGGGUUCagg---UUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.