Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11861 | 3' | -57.3 | NC_003266.2 | + | 16339 | 1.12 | 0.000228 |
Target: 5'- cCGGACCGCUCGCCAGGCGCGAAAACCa -3' miRNA: 3'- -GCCUGGCGAGCGGUCCGCGCUUUUGG- -5' |
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11861 | 3' | -57.3 | NC_003266.2 | + | 16136 | 0.76 | 0.110821 |
Target: 5'- gGGGCCGUagaUC-UCAGGCGCGAuGACCu -3' miRNA: 3'- gCCUGGCG---AGcGGUCCGCGCUuUUGG- -5' |
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11861 | 3' | -57.3 | NC_003266.2 | + | 8796 | 0.75 | 0.146845 |
Target: 5'- gCGGccACCGUggagcgCGCCGGcCGCGGAGACCu -3' miRNA: 3'- -GCC--UGGCGa-----GCGGUCcGCGCUUUUGG- -5' |
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11861 | 3' | -57.3 | NC_003266.2 | + | 23263 | 0.74 | 0.164046 |
Target: 5'- gGGGCUcugccaGCcaccCGCCGGGcCGCGAGAGCCc -3' miRNA: 3'- gCCUGG------CGa---GCGGUCC-GCGCUUUUGG- -5' |
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11861 | 3' | -57.3 | NC_003266.2 | + | 21913 | 0.73 | 0.17331 |
Target: 5'- aGGGCgcccaGCagGUCGGGCGCGGAGAUCu -3' miRNA: 3'- gCCUGg----CGagCGGUCCGCGCUUUUGG- -5' |
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11861 | 3' | -57.3 | NC_003266.2 | + | 5308 | 0.72 | 0.226895 |
Target: 5'- uCGG-CCGCgUgGCCuuuGGCGCGGAGcuuACCu -3' miRNA: 3'- -GCCuGGCG-AgCGGu--CCGCGCUUU---UGG- -5' |
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11861 | 3' | -57.3 | NC_003266.2 | + | 5493 | 0.72 | 0.226895 |
Target: 5'- gCGaGACCGUcugCGCCcacugcGGCGCGGAcGCCu -3' miRNA: 3'- -GC-CUGGCGa--GCGGu-----CCGCGCUUuUGG- -5' |
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11861 | 3' | -57.3 | NC_003266.2 | + | 11012 | 0.72 | 0.23543 |
Target: 5'- gCGGguGCCGCUCcggcgacgacgcccCCAGGCGCGccAGCCc -3' miRNA: 3'- -GCC--UGGCGAGc-------------GGUCCGCGCuuUUGG- -5' |
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11861 | 3' | -57.3 | NC_003266.2 | + | 7099 | 0.71 | 0.245513 |
Target: 5'- aGGGCUGCUgCGCCuacaAGGC-CGuuAACCa -3' miRNA: 3'- gCCUGGCGA-GCGG----UCCGcGCuuUUGG- -5' |
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11861 | 3' | -57.3 | NC_003266.2 | + | 17003 | 0.71 | 0.263335 |
Target: 5'- cCGcGGCCGCgCGCCucugacccugccgcGGGCGCGcu-ACCa -3' miRNA: 3'- -GC-CUGGCGaGCGG--------------UCCGCGCuuuUGG- -5' |
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11861 | 3' | -57.3 | NC_003266.2 | + | 3641 | 0.69 | 0.316762 |
Target: 5'- --uGCCGCcagCGCCGuGCGCGGAAugGCCa -3' miRNA: 3'- gccUGGCGa--GCGGUcCGCGCUUU--UGG- -5' |
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11861 | 3' | -57.3 | NC_003266.2 | + | 21333 | 0.69 | 0.332757 |
Target: 5'- gGGACUGCUgCGCCGcaGCGCccuGGCCa -3' miRNA: 3'- gCCUGGCGA-GCGGUc-CGCGcuuUUGG- -5' |
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11861 | 3' | -57.3 | NC_003266.2 | + | 3840 | 0.69 | 0.340974 |
Target: 5'- uGGGUCaGCUCGcCCAGGCGCugggucAAGGCCu -3' miRNA: 3'- gCCUGG-CGAGC-GGUCCGCGc-----UUUUGG- -5' |
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11861 | 3' | -57.3 | NC_003266.2 | + | 9760 | 0.69 | 0.340974 |
Target: 5'- aGGACC--UgGCCAGGUGUcAGGACCa -3' miRNA: 3'- gCCUGGcgAgCGGUCCGCGcUUUUGG- -5' |
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11861 | 3' | -57.3 | NC_003266.2 | + | 15766 | 0.69 | 0.348494 |
Target: 5'- cCGGgcgaugcGCCGC-CGCCGgcucuuGGCGCGGGcguACCg -3' miRNA: 3'- -GCC-------UGGCGaGCGGU------CCGCGCUUu--UGG- -5' |
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11861 | 3' | -57.3 | NC_003266.2 | + | 13583 | 0.69 | 0.357844 |
Target: 5'- --cGCCGCUgGCacgaCAGGCaGCGggGACUg -3' miRNA: 3'- gccUGGCGAgCG----GUCCG-CGCuuUUGG- -5' |
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11861 | 3' | -57.3 | NC_003266.2 | + | 11822 | 0.69 | 0.361288 |
Target: 5'- gCGGACCugcacuggcagcccaGC-CGCCGGGUcuUGGAAGCCg -3' miRNA: 3'- -GCCUGG---------------CGaGCGGUCCGc-GCUUUUGG- -5' |
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11861 | 3' | -57.3 | NC_003266.2 | + | 9355 | 0.68 | 0.366496 |
Target: 5'- cCGaGACCauGCgaCGCC-GGCGCGGcgAGACCa -3' miRNA: 3'- -GC-CUGG--CGa-GCGGuCCGCGCU--UUUGG- -5' |
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11861 | 3' | -57.3 | NC_003266.2 | + | 17311 | 0.68 | 0.384228 |
Target: 5'- gGGAUCGCcccgaUCGCCGcGGCGaugauGggGAUCa -3' miRNA: 3'- gCCUGGCG-----AGCGGU-CCGCg----CuuUUGG- -5' |
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11861 | 3' | -57.3 | NC_003266.2 | + | 17251 | 0.68 | 0.384228 |
Target: 5'- --aACCGCUUGCUgauGGCGCGcc-GCCg -3' miRNA: 3'- gccUGGCGAGCGGu--CCGCGCuuuUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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