miRNA display CGI


Results 21 - 33 of 33 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11861 3' -57.3 NC_003266.2 + 16136 0.76 0.110821
Target:  5'- gGGGCCGUagaUC-UCAGGCGCGAuGACCu -3'
miRNA:   3'- gCCUGGCG---AGcGGUCCGCGCUuUUGG- -5'
11861 3' -57.3 NC_003266.2 + 16339 1.12 0.000228
Target:  5'- cCGGACCGCUCGCCAGGCGCGAAAACCa -3'
miRNA:   3'- -GCCUGGCGAGCGGUCCGCGCUUUUGG- -5'
11861 3' -57.3 NC_003266.2 + 16929 0.67 0.430968
Target:  5'- gCGuGCCGCgguaGCCcGGCGUGggGAUg -3'
miRNA:   3'- -GCcUGGCGag--CGGuCCGCGCuuUUGg -5'
11861 3' -57.3 NC_003266.2 + 17003 0.71 0.263335
Target:  5'- cCGcGGCCGCgCGCCucugacccugccgcGGGCGCGcu-ACCa -3'
miRNA:   3'- -GC-CUGGCGaGCGG--------------UCCGCGCuuuUGG- -5'
11861 3' -57.3 NC_003266.2 + 17251 0.68 0.384228
Target:  5'- --aACCGCUUGCUgauGGCGCGcc-GCCg -3'
miRNA:   3'- gccUGGCGAGCGGu--CCGCGCuuuUGG- -5'
11861 3' -57.3 NC_003266.2 + 17311 0.68 0.384228
Target:  5'- gGGAUCGCcccgaUCGCCGcGGCGaugauGggGAUCa -3'
miRNA:   3'- gCCUGGCG-----AGCGGU-CCGCg----CuuUUGG- -5'
11861 3' -57.3 NC_003266.2 + 20460 0.67 0.440709
Target:  5'- aCGGugCGCuugauuucgaacUCGUUGGGCGUcaGGAGCCg -3'
miRNA:   3'- -GCCugGCG------------AGCGGUCCGCGc-UUUUGG- -5'
11861 3' -57.3 NC_003266.2 + 21159 0.66 0.522738
Target:  5'- aGGGcCCGCaCcCCAGGuCGCGGAugauGGCCc -3'
miRNA:   3'- gCCU-GGCGaGcGGUCC-GCGCUU----UUGG- -5'
11861 3' -57.3 NC_003266.2 + 21333 0.69 0.332757
Target:  5'- gGGACUGCUgCGCCGcaGCGCccuGGCCa -3'
miRNA:   3'- gCCUGGCGA-GCGGUc-CGCGcuuUUGG- -5'
11861 3' -57.3 NC_003266.2 + 21913 0.73 0.17331
Target:  5'- aGGGCgcccaGCagGUCGGGCGCGGAGAUCu -3'
miRNA:   3'- gCCUGg----CGagCGGUCCGCGCUUUUGG- -5'
11861 3' -57.3 NC_003266.2 + 22383 0.67 0.430968
Target:  5'- gCGcGCUGCUgcgugcacgaCGCCGGGUGCGcu-ACCa -3'
miRNA:   3'- -GCcUGGCGA----------GCGGUCCGCGCuuuUGG- -5'
11861 3' -57.3 NC_003266.2 + 23263 0.74 0.164046
Target:  5'- gGGGCUcugccaGCcaccCGCCGGGcCGCGAGAGCCc -3'
miRNA:   3'- gCCUGG------CGa---GCGGUCC-GCGCUUUUGG- -5'
11861 3' -57.3 NC_003266.2 + 30338 0.67 0.440709
Target:  5'- uGGACCGUUCGCCuccuacGUGCucuuuGCCu -3'
miRNA:   3'- gCCUGGCGAGCGGuc----CGCGcuuu-UGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.