miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11862 5' -59 NC_003266.2 + 10184 0.66 0.408396
Target:  5'- aGGugauGCCgGCGGCgGUGGUggag-GCg -3'
miRNA:   3'- gCCu---CGGgCGCCGgUACCGaagaaCG- -5'
11862 5' -59 NC_003266.2 + 17777 0.66 0.399083
Target:  5'- aCGGAGCCgGCGGggggaaccggguCCAggcGGCUguugaUCUgccgcUGCa -3'
miRNA:   3'- -GCCUCGGgCGCC------------GGUa--CCGA-----AGA-----ACG- -5'
11862 5' -59 NC_003266.2 + 23181 0.66 0.399082
Target:  5'- gCGGAGgcgacgggcuCUCGCGGCCcggcggGUGGCUg---GCa -3'
miRNA:   3'- -GCCUC----------GGGCGCCGG------UACCGAagaaCG- -5'
11862 5' -59 NC_003266.2 + 6675 0.67 0.332904
Target:  5'- aGGAGCCCggcuccgagauuggcGCGGCUG-GGUUUUUcgGCg -3'
miRNA:   3'- gCCUCGGG---------------CGCCGGUaCCGAAGAa-CG- -5'
11862 5' -59 NC_003266.2 + 10920 0.67 0.329653
Target:  5'- aCGGcGgCCGCGGCgguaGUGGCUggaagUUGCu -3'
miRNA:   3'- -GCCuCgGGCGCCGg---UACCGAag---AACG- -5'
11862 5' -59 NC_003266.2 + 5177 0.68 0.290993
Target:  5'- aGGGGUgCGC-GCCG-GGCUgggcgCUUGCg -3'
miRNA:   3'- gCCUCGgGCGcCGGUaCCGAa----GAACG- -5'
11862 5' -59 NC_003266.2 + 15857 0.7 0.201718
Target:  5'- uCGGAGaCgCGCGGCCAcGGCggcg-GCa -3'
miRNA:   3'- -GCCUC-GgGCGCCGGUaCCGaagaaCG- -5'
11862 5' -59 NC_003266.2 + 26400 0.71 0.185983
Target:  5'- gCGGcGCCgGCGGCCA-GGCccaUCUgggGCu -3'
miRNA:   3'- -GCCuCGGgCGCCGGUaCCGa--AGAa--CG- -5'
11862 5' -59 NC_003266.2 + 4951 0.73 0.137221
Target:  5'- -uGAGCCCGuCGGCCAUgGGCaUUUUGg -3'
miRNA:   3'- gcCUCGGGC-GCCGGUA-CCGaAGAACg -5'
11862 5' -59 NC_003266.2 + 11440 0.73 0.126117
Target:  5'- -cGAGCCCGagGGCCGcUGGCUUCUg-- -3'
miRNA:   3'- gcCUCGGGCg-CCGGU-ACCGAAGAacg -5'
11862 5' -59 NC_003266.2 + 23009 0.8 0.039466
Target:  5'- aGGAGCUgGCGGCCGUgGGCUUCa-GCu -3'
miRNA:   3'- gCCUCGGgCGCCGGUA-CCGAAGaaCG- -5'
11862 5' -59 NC_003266.2 + 21112 1.12 0.000138
Target:  5'- cCGGAGCCCGCGGCCAUGGCUUCUUGCa -3'
miRNA:   3'- -GCCUCGGGCGCCGGUACCGAAGAACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.