miRNA display CGI

Results 1 - 8 of 8 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
11863	3'	-55	NC_003266.2	+	31257	0.66	0.602176
	Target:  5'- uCCGACCAGGC--AGGUGAacuucuggcgcUGCUGc-- -3' miRNA:   3'- -GGCUGGUCCGggUCUACU-----------ACGACuag -5'
11863	3'	-55	NC_003266.2	+	8055	0.66	0.584026
	Target:  5'- gUCGGCCuGGCCCucuucugccucgauGGUGGucaUGCUGAc- -3' miRNA:   3'- -GGCUGGuCCGGGu-------------CUACU---ACGACUag -5'
11863	3'	-55	NC_003266.2	+	21155	0.66	0.568232
	Target:  5'- cCCGcaccCCAGGUCgCGGAUGAUGgccCUGAg- -3' miRNA:   3'- -GGCu---GGUCCGG-GUCUACUAC---GACUag -5'
11863	3'	-55	NC_003266.2	+	22449	0.67	0.534789
	Target:  5'- cCCGACCGGGCCaAGAUuacccaGAaccGCUGGg- -3' miRNA:   3'- -GGCUGGUCCGGgUCUA------CUa--CGACUag -5'
11863	3'	-55	NC_003266.2	+	17772	0.71	0.329033
	Target:  5'- gCCGgcggggggaACCGGGUCCAGgcGGcUGUUGAUCu -3' miRNA:   3'- -GGC---------UGGUCCGGGUCuaCU-ACGACUAG- -5'
11863	3'	-55	NC_003266.2	+	27148	0.71	0.304823
	Target:  5'- -gGGCCGGGCCCuGAgGGUGCUccUCg -3' miRNA:   3'- ggCUGGUCCGGGuCUaCUACGAcuAG- -5'
11863	3'	-55	NC_003266.2	+	26391	0.81	0.069935
	Target:  5'- gCGGCCAGGCCCAucUGggGCUGGUa -3' miRNA:   3'- gGCUGGUCCGGGUcuACuaCGACUAg -5'
11863	3'	-55	NC_003266.2	+	22236	1.1	0.000463
	Target:  5'- gCCGACCAGGCCCAGAUGAUGCUGAUCc -3' miRNA:   3'- -GGCUGGUCCGGGUCUACUACGACUAG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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