Results 21 - 31 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11863 | 5' | -53.9 | NC_003266.2 | + | 21048 | 0.69 | 0.487824 |
Target: 5'- ---cUUGCAagaagccaugGCCGCGGGCuCCGGCgaGCa -3' miRNA: 3'- cgcuAACGU----------UGGUGUUCG-GGCCGa-CG- -5' |
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11863 | 5' | -53.9 | NC_003266.2 | + | 21901 | 0.66 | 0.679896 |
Target: 5'- cGCGucaGUUGCAgggcGCCcaGCAGGUCgGGC-GCg -3' miRNA: 3'- -CGC---UAACGU----UGG--UGUUCGGgCCGaCG- -5' |
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11863 | 5' | -53.9 | NC_003266.2 | + | 22200 | 1.15 | 0.000294 |
Target: 5'- uGCGAUUGCAACCACAAGCCCGGCUGCg -3' miRNA: 3'- -CGCUAACGUUGGUGUUCGGGCCGACG- -5' |
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11863 | 5' | -53.9 | NC_003266.2 | + | 23180 | 0.67 | 0.564115 |
Target: 5'- gGCGGagGCGACgggcucuCGC-GGCCCGGCgggugGCu -3' miRNA: 3'- -CGCUaaCGUUG-------GUGuUCGGGCCGa----CG- -5' |
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11863 | 5' | -53.9 | NC_003266.2 | + | 24041 | 0.75 | 0.217887 |
Target: 5'- aGCGuUUGCGGCC-CGAGUCuCGuGCUGCc -3' miRNA: 3'- -CGCuAACGUUGGuGUUCGG-GC-CGACG- -5' |
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11863 | 5' | -53.9 | NC_003266.2 | + | 24668 | 0.68 | 0.50949 |
Target: 5'- ----cUGCuGCCACAcGCCCauGGCUGUc -3' miRNA: 3'- cgcuaACGuUGGUGUuCGGG--CCGACG- -5' |
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11863 | 5' | -53.9 | NC_003266.2 | + | 24846 | 0.67 | 0.57661 |
Target: 5'- cGgGAUccUGcCGGCCACcuGCuCCGcGCUGCc -3' miRNA: 3'- -CgCUA--AC-GUUGGUGuuCG-GGC-CGACG- -5' |
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11863 | 5' | -53.9 | NC_003266.2 | + | 25068 | 0.71 | 0.339319 |
Target: 5'- -aGGUUGCAGCgGCAguggcacucgagcaGGCCCucGCUGCu -3' miRNA: 3'- cgCUAACGUUGgUGU--------------UCGGGc-CGACG- -5' |
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11863 | 5' | -53.9 | NC_003266.2 | + | 27232 | 0.69 | 0.498604 |
Target: 5'- ----cUGCAACCAC---CCCGGcCUGCa -3' miRNA: 3'- cgcuaACGUUGGUGuucGGGCC-GACG- -5' |
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11863 | 5' | -53.9 | NC_003266.2 | + | 31518 | 0.71 | 0.377615 |
Target: 5'- ----cUGguACUGCAGGCCCcggcgGGCUGCa -3' miRNA: 3'- cgcuaACguUGGUGUUCGGG-----CCGACG- -5' |
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11863 | 5' | -53.9 | NC_003266.2 | + | 33284 | 0.72 | 0.300776 |
Target: 5'- gGCGGUUGUGGCgCAuCAGGCCCcGCaGCa -3' miRNA: 3'- -CGCUAACGUUG-GU-GUUCGGGcCGaCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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