Results 21 - 31 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11863 | 5' | -53.9 | NC_003266.2 | + | 21048 | 0.69 | 0.487824 |
Target: 5'- ---cUUGCAagaagccaugGCCGCGGGCuCCGGCgaGCa -3' miRNA: 3'- cgcuAACGU----------UGGUGUUCG-GGCCGa-CG- -5' |
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11863 | 5' | -53.9 | NC_003266.2 | + | 13367 | 0.69 | 0.487824 |
Target: 5'- aGCGAgcuggGCAggAUCACGcGCCCGcGCUuGCu -3' miRNA: 3'- -CGCUaa---CGU--UGGUGUuCGGGC-CGA-CG- -5' |
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11863 | 5' | -53.9 | NC_003266.2 | + | 6824 | 0.69 | 0.445867 |
Target: 5'- gGCGuaggagucUUGCAGCUuggcgACAAGCUCGGCgGUg -3' miRNA: 3'- -CGCu-------AACGUUGG-----UGUUCGGGCCGaCG- -5' |
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11863 | 5' | -53.9 | NC_003266.2 | + | 9634 | 0.7 | 0.406002 |
Target: 5'- gGCGAggaGC-ACCAggucuuUggGCCCGGCUuGCu -3' miRNA: 3'- -CGCUaa-CGuUGGU------GuuCGGGCCGA-CG- -5' |
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11863 | 5' | -53.9 | NC_003266.2 | + | 15753 | 0.71 | 0.386928 |
Target: 5'- aUGcgUGCGG-CGCGAGCCUuGCUGCg -3' miRNA: 3'- cGCuaACGUUgGUGUUCGGGcCGACG- -5' |
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11863 | 5' | -53.9 | NC_003266.2 | + | 31518 | 0.71 | 0.377615 |
Target: 5'- ----cUGguACUGCAGGCCCcggcgGGCUGCa -3' miRNA: 3'- cgcuaACguUGGUGUUCGGG-----CCGACG- -5' |
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11863 | 5' | -53.9 | NC_003266.2 | + | 3887 | 0.71 | 0.359447 |
Target: 5'- cCGug-GCAACCGC-GGCCCGcGuCUGCu -3' miRNA: 3'- cGCuaaCGUUGGUGuUCGGGC-C-GACG- -5' |
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11863 | 5' | -53.9 | NC_003266.2 | + | 25068 | 0.71 | 0.339319 |
Target: 5'- -aGGUUGCAGCgGCAguggcacucgagcaGGCCCucGCUGCu -3' miRNA: 3'- cgCUAACGUUGgUGU--------------UCGGGc-CGACG- -5' |
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11863 | 5' | -53.9 | NC_003266.2 | + | 33284 | 0.72 | 0.300776 |
Target: 5'- gGCGGUUGUGGCgCAuCAGGCCCcGCaGCa -3' miRNA: 3'- -CGCUAACGUUG-GU-GUUCGGGcCGaCG- -5' |
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11863 | 5' | -53.9 | NC_003266.2 | + | 24041 | 0.75 | 0.217887 |
Target: 5'- aGCGuUUGCGGCC-CGAGUCuCGuGCUGCc -3' miRNA: 3'- -CGCuAACGUUGGuGUUCGG-GC-CGACG- -5' |
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11863 | 5' | -53.9 | NC_003266.2 | + | 22200 | 1.15 | 0.000294 |
Target: 5'- uGCGAUUGCAACCACAAGCCCGGCUGCg -3' miRNA: 3'- -CGCUAACGUUGGUGUUCGGGCCGACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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