miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11864 3' -55.7 NC_003266.2 + 24232 0.66 0.542708
Target:  5'- gGCAagccCGUGGUcagcgacgaGCAGCUGGCgCggUGGCu -3'
miRNA:   3'- -CGUc---GCACCA---------CGUCGACCG-GuuGUUG- -5'
11864 3' -55.7 NC_003266.2 + 12210 0.66 0.542708
Target:  5'- cGCGGCGacgagGCcgGGCUGGUguACAACg -3'
miRNA:   3'- -CGUCGCacca-CG--UCGACCGguUGUUG- -5'
11864 3' -55.7 NC_003266.2 + 3646 0.66 0.531549
Target:  5'- cCAGCGccGUGC-GCggaaUGGCCAugGGCg -3'
miRNA:   3'- cGUCGCacCACGuCG----ACCGGUugUUG- -5'
11864 3' -55.7 NC_003266.2 + 5198 0.66 0.524893
Target:  5'- cGCuuGCGagGGUGCgcuucaggcucauccGGCUGGUCGAgAACc -3'
miRNA:   3'- -CGu-CGCa-CCACG---------------UCGACCGGUUgUUG- -5'
11864 3' -55.7 NC_003266.2 + 33881 0.66 0.50949
Target:  5'- -gAGCGU-GUGCcuguGCUGuGCCAACAu- -3'
miRNA:   3'- cgUCGCAcCACGu---CGAC-CGGUUGUug -5'
11864 3' -55.7 NC_003266.2 + 3670 0.66 0.487824
Target:  5'- aGCAGCuGcGGcgGCAGCUGcGuCCAcCGACg -3'
miRNA:   3'- -CGUCG-CaCCa-CGUCGAC-C-GGUuGUUG- -5'
11864 3' -55.7 NC_003266.2 + 9930 0.67 0.456171
Target:  5'- -uGGUGUaGGaGCAGUUGGCCAugAc- -3'
miRNA:   3'- cgUCGCA-CCaCGUCGACCGGUugUug -5'
11864 3' -55.7 NC_003266.2 + 15670 0.67 0.456171
Target:  5'- gGCGGCGggGGUGUAGUUgcgagcgucGGCCAcCAc- -3'
miRNA:   3'- -CGUCGCa-CCACGUCGA---------CCGGUuGUug -5'
11864 3' -55.7 NC_003266.2 + 22339 0.68 0.406003
Target:  5'- aGCAGCGcGcGUcGUuGUUGGCCAGCuGCa -3'
miRNA:   3'- -CGUCGCaC-CA-CGuCGACCGGUUGuUG- -5'
11864 3' -55.7 NC_003266.2 + 14985 0.68 0.406003
Target:  5'- uGCGGCGUGGaGCAagucuacuggucGCUGcCCGACAu- -3'
miRNA:   3'- -CGUCGCACCaCGU------------CGACcGGUUGUug -5'
11864 3' -55.7 NC_003266.2 + 14781 0.68 0.406003
Target:  5'- cGCAGCaGUGGcgGCGGCcaaGGCUGAUGAa -3'
miRNA:   3'- -CGUCG-CACCa-CGUCGa--CCGGUUGUUg -5'
11864 3' -55.7 NC_003266.2 + 11486 0.68 0.396392
Target:  5'- aGCAuCGUGGUGCAGgaGcGCgGGCuGCc -3'
miRNA:   3'- -CGUcGCACCACGUCgaC-CGgUUGuUG- -5'
11864 3' -55.7 NC_003266.2 + 13846 0.69 0.341898
Target:  5'- -gAGCGUGaUGCAGCaGGCaauGGCGGCg -3'
miRNA:   3'- cgUCGCACcACGUCGaCCGg--UUGUUG- -5'
11864 3' -55.7 NC_003266.2 + 11370 0.7 0.316752
Target:  5'- cGCAGCuguuccugGUGGUGCAGCacaGUCGggACAACg -3'
miRNA:   3'- -CGUCG--------CACCACGUCGac-CGGU--UGUUG- -5'
11864 3' -55.7 NC_003266.2 + 17661 0.7 0.316752
Target:  5'- aCGGgGUGGUGgAcCUGGCCAaucaggccguGCAGCg -3'
miRNA:   3'- cGUCgCACCACgUcGACCGGU----------UGUUG- -5'
11864 3' -55.7 NC_003266.2 + 24958 0.7 0.308685
Target:  5'- aGCGGCGggGGgcacucGCGGaaGGUCAGCGGCa -3'
miRNA:   3'- -CGUCGCa-CCa-----CGUCgaCCGGUUGUUG- -5'
11864 3' -55.7 NC_003266.2 + 24038 0.7 0.308685
Target:  5'- aCAGCGcccUGGUGgAGUUGGaaggCGACAACg -3'
miRNA:   3'- cGUCGC---ACCACgUCGACCg---GUUGUUG- -5'
11864 3' -55.7 NC_003266.2 + 17015 0.75 0.146631
Target:  5'- gGCAGCG-GGaguUGCAGCUGuGCggCGACGACg -3'
miRNA:   3'- -CGUCGCaCC---ACGUCGAC-CG--GUUGUUG- -5'
11864 3' -55.7 NC_003266.2 + 23930 0.78 0.086312
Target:  5'- uCGGCGcgGGUGCGGUUGGCgCGACAGg -3'
miRNA:   3'- cGUCGCa-CCACGUCGACCG-GUUGUUg -5'
11864 3' -55.7 NC_003266.2 + 24913 0.79 0.072081
Target:  5'- gGCAGCGcGGaGCAGgUGGCCGGCAGg -3'
miRNA:   3'- -CGUCGCaCCaCGUCgACCGGUUGUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.