miRNA display CGI


Results 41 - 60 of 81 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11865 3' -58.8 NC_003266.2 + 15122 0.68 0.297197
Target:  5'- cGAGCAG--GCCGUCuacUCGCAGCAGCUg -3'
miRNA:   3'- -CUUGUUggUGGCGGc--GGCGUCGUCGG- -5'
11865 3' -58.8 NC_003266.2 + 15271 0.71 0.195121
Target:  5'- ---gGACC-CUGCCGCugCGCAGCAGUa -3'
miRNA:   3'- cuugUUGGuGGCGGCG--GCGUCGUCGg -5'
11865 3' -58.8 NC_003266.2 + 15615 0.67 0.336643
Target:  5'- -cGCAACuaCACCcCCGCCGCcGC-GCCc -3'
miRNA:   3'- cuUGUUG--GUGGcGGCGGCGuCGuCGG- -5'
11865 3' -58.8 NC_003266.2 + 15740 0.7 0.223233
Target:  5'- uAGC-ACCACCGCCauGCgUGCGGCgcgAGCCu -3'
miRNA:   3'- cUUGuUGGUGGCGG--CG-GCGUCG---UCGG- -5'
11865 3' -58.8 NC_003266.2 + 15765 0.69 0.24814
Target:  5'- cGGGCGAUgCGCCGCCGCCgGCucuuggcGCGGgCg -3'
miRNA:   3'- -CUUGUUG-GUGGCGGCGG-CGu------CGUCgG- -5'
11865 3' -58.8 NC_003266.2 + 15866 0.84 0.019567
Target:  5'- -cGCGGCCACgGCgGCgGCAGCGGCCa -3'
miRNA:   3'- cuUGUUGGUGgCGgCGgCGUCGUCGG- -5'
11865 3' -58.8 NC_003266.2 + 15941 0.83 0.023427
Target:  5'- gGGACAugcuggcuaugGCCGCUGCCGCCGCcGUGGCCg -3'
miRNA:   3'- -CUUGU-----------UGGUGGCGGCGGCGuCGUCGG- -5'
11865 3' -58.8 NC_003266.2 + 16086 0.67 0.328457
Target:  5'- uGAGau-CUACgGCC-CCGCGGCGGCg -3'
miRNA:   3'- -CUUguuGGUGgCGGcGGCGUCGUCGg -5'
11865 3' -58.8 NC_003266.2 + 16150 0.77 0.066245
Target:  5'- -----uUCACCGCCGCCGCGG-GGCCg -3'
miRNA:   3'- cuuguuGGUGGCGGCGGCGUCgUCGG- -5'
11865 3' -58.8 NC_003266.2 + 16489 0.68 0.289751
Target:  5'- cAGCAGgUGCUGCCGagCGCGGC-GCCg -3'
miRNA:   3'- cUUGUUgGUGGCGGCg-GCGUCGuCGG- -5'
11865 3' -58.8 NC_003266.2 + 16931 0.74 0.108451
Target:  5'- aGACcACCAcCCGCCGCCGUcGUcGCCg -3'
miRNA:   3'- cUUGuUGGU-GGCGGCGGCGuCGuCGG- -5'
11865 3' -58.8 NC_003266.2 + 16947 0.68 0.31253
Target:  5'- -uAUAGCCgugguagaAgCGCgUGCCGCGGUAGCCc -3'
miRNA:   3'- cuUGUUGG--------UgGCG-GCGGCGUCGUCGG- -5'
11865 3' -58.8 NC_003266.2 + 16965 0.71 0.16875
Target:  5'- uGAACucCCGCUGCCGCCcugguGCGgagaguguaccgccGCGGCCg -3'
miRNA:   3'- -CUUGuuGGUGGCGGCGG-----CGU--------------CGUCGG- -5'
11865 3' -58.8 NC_003266.2 + 17166 0.66 0.370854
Target:  5'- cGGgAugCGCCGCCacccccaccgGCgGCGGCGcGCCa -3'
miRNA:   3'- cUUgUugGUGGCGG----------CGgCGUCGU-CGG- -5'
11865 3' -58.8 NC_003266.2 + 17241 0.71 0.169685
Target:  5'- uGAUGGCgCGCCGCCGCCgguggggGUGGCGGCg -3'
miRNA:   3'- cUUGUUG-GUGGCGGCGG-------CGUCGUCGg -5'
11865 3' -58.8 NC_003266.2 + 17484 0.71 0.18477
Target:  5'- aAACGGCCGCgUGCCGUguCGCGG-AGCCa -3'
miRNA:   3'- cUUGUUGGUG-GCGGCG--GCGUCgUCGG- -5'
11865 3' -58.8 NC_003266.2 + 17750 0.69 0.241705
Target:  5'- aGGCGGCUguugauCUGCCGCUGCA-CGGCCu -3'
miRNA:   3'- cUUGUUGGu-----GGCGGCGGCGUcGUCGG- -5'
11865 3' -58.8 NC_003266.2 + 17995 0.66 0.398027
Target:  5'- ---aAGCCcCUGCCGCCGgUGGCcguGGCCc -3'
miRNA:   3'- cuugUUGGuGGCGGCGGC-GUCG---UCGG- -5'
11865 3' -58.8 NC_003266.2 + 18053 0.68 0.31253
Target:  5'- -cACGGCCACCGgCGgCaGgGGCuAGCCa -3'
miRNA:   3'- cuUGUUGGUGGCgGCgG-CgUCG-UCGG- -5'
11865 3' -58.8 NC_003266.2 + 18396 0.72 0.143993
Target:  5'- ---uGACCACCGaCCGCaGcCAGCGGCUg -3'
miRNA:   3'- cuugUUGGUGGC-GGCGgC-GUCGUCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.