miRNA display CGI


Results 61 - 80 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11865 3' -58.8 NC_003266.2 + 20174 0.66 0.398027
Target:  5'- aGAGCAugUug-GCCGCCGagaGGUAGUCg -3'
miRNA:   3'- -CUUGUugGuggCGGCGGCg--UCGUCGG- -5'
11865 3' -58.8 NC_003266.2 + 21330 0.74 0.118149
Target:  5'- cGAGgGACUGCUG-CGCCGCAGCgcccuGGCCa -3'
miRNA:   3'- -CUUgUUGGUGGCgGCGGCGUCG-----UCGG- -5'
11865 3' -58.8 NC_003266.2 + 22318 0.68 0.282453
Target:  5'- -cGCAcCCGgCGUCGUgcaCGCAGCAGCg -3'
miRNA:   3'- cuUGUuGGUgGCGGCG---GCGUCGUCGg -5'
11865 3' -58.8 NC_003266.2 + 22393 0.66 0.407364
Target:  5'- cAACAACgaCGCgCGCUGCUGCGuGCAcgacGCCg -3'
miRNA:   3'- cUUGUUG--GUG-GCGGCGGCGU-CGU----CGG- -5'
11865 3' -58.8 NC_003266.2 + 23052 0.71 0.195121
Target:  5'- uGGGCGGCUGCUGCgGCgGCGGUGGUUg -3'
miRNA:   3'- -CUUGUUGGUGGCGgCGgCGUCGUCGG- -5'
11865 3' -58.8 NC_003266.2 + 23118 1.11 0.00015
Target:  5'- gGAACAACCACCGCCGCCGCAGCAGCCg -3'
miRNA:   3'- -CUUGUUGGUGGCGGCGGCGUCGUCGG- -5'
11865 3' -58.8 NC_003266.2 + 23254 0.69 0.241705
Target:  5'- --cCAGCCAcCCGCCggGCCGCGagAGCCc -3'
miRNA:   3'- cuuGUUGGU-GGCGG--CGGCGUcgUCGG- -5'
11865 3' -58.8 NC_003266.2 + 23353 0.72 0.152278
Target:  5'- -uGCccCCACCGCCGaCaagaaGCAGCAGCa -3'
miRNA:   3'- cuUGuuGGUGGCGGC-Gg----CGUCGUCGg -5'
11865 3' -58.8 NC_003266.2 + 23388 0.74 0.105387
Target:  5'- aGAGCuuAACCGCC-CCGCCGCc-CAGCCc -3'
miRNA:   3'- -CUUG--UUGGUGGcGGCGGCGucGUCGG- -5'
11865 3' -58.8 NC_003266.2 + 24608 0.66 0.370854
Target:  5'- aGACAGCCAUgGgCGUgugGCAGCAGUg -3'
miRNA:   3'- cUUGUUGGUGgCgGCGg--CGUCGUCGg -5'
11865 3' -58.8 NC_003266.2 + 24711 0.67 0.336643
Target:  5'- cGAGCGcACCACCGCCuCgGaccuGGCAGaCCu -3'
miRNA:   3'- -CUUGU-UGGUGGCGGcGgCg---UCGUC-GG- -5'
11865 3' -58.8 NC_003266.2 + 24906 0.68 0.275301
Target:  5'- cGAguGCCccCCGCCGCUGUGG-AGCCa -3'
miRNA:   3'- cUUguUGGu-GGCGGCGGCGUCgUCGG- -5'
11865 3' -58.8 NC_003266.2 + 25010 0.76 0.086122
Target:  5'- cGAguGCCACUGCCGCUGCAaccucuGCAcGCCg -3'
miRNA:   3'- cUUguUGGUGGCGGCGGCGU------CGU-CGG- -5'
11865 3' -58.8 NC_003266.2 + 25590 0.71 0.191964
Target:  5'- aGAAgUAGCCGCCGCCGCCagaccgucguccucgGCggagaaagcaAGCAGCa -3'
miRNA:   3'- -CUU-GUUGGUGGCGGCGG---------------CG----------UCGUCGg -5'
11865 3' -58.8 NC_003266.2 + 25951 0.66 0.407364
Target:  5'- aGAAaauCCACaGCgGCgGCGGCGGCa -3'
miRNA:   3'- -CUUguuGGUGgCGgCGgCGUCGUCGg -5'
11865 3' -58.8 NC_003266.2 + 26016 0.77 0.07024
Target:  5'- -cACuGCCGCCGCCGCCGCuguggauuuucuAGCuGCUg -3'
miRNA:   3'- cuUGuUGGUGGCGGCGGCG------------UCGuCGG- -5'
11865 3' -58.8 NC_003266.2 + 27022 0.75 0.088654
Target:  5'- ---gGACCACUGCCGCCGCuuucGCuGCUu -3'
miRNA:   3'- cuugUUGGUGGCGGCGGCGu---CGuCGG- -5'
11865 3' -58.8 NC_003266.2 + 30993 0.7 0.211596
Target:  5'- uGGACAuggACgGCCGCgGCuCGgAGCAGCg -3'
miRNA:   3'- -CUUGU---UGgUGGCGgCG-GCgUCGUCGg -5'
11865 3' -58.8 NC_003266.2 + 31161 0.69 0.237911
Target:  5'- --cCGACCAUCGCCucuccuacgagcucCUGCAGCAGCg -3'
miRNA:   3'- cuuGUUGGUGGCGGc-------------GGCGUCGUCGg -5'
11865 3' -58.8 NC_003266.2 + 31243 0.7 0.229253
Target:  5'- uGAACuuCUGgCGCUGCUGCAGgAGCUc -3'
miRNA:   3'- -CUUGuuGGUgGCGGCGGCGUCgUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.