miRNA display CGI


Results 41 - 60 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11865 3' -58.8 NC_003266.2 + 14879 0.7 0.211596
Target:  5'- cGGACAAgaaaaaCACCGCCuaCCGCAGCugguaccuGGCCu -3'
miRNA:   3'- -CUUGUUg-----GUGGCGGc-GGCGUCG--------UCGG- -5'
11865 3' -58.8 NC_003266.2 + 23052 0.71 0.195121
Target:  5'- uGGGCGGCUGCUGCgGCgGCGGUGGUUg -3'
miRNA:   3'- -CUUGUUGGUGGCGgCGgCGUCGUCGG- -5'
11865 3' -58.8 NC_003266.2 + 15271 0.71 0.195121
Target:  5'- ---gGACC-CUGCCGCugCGCAGCAGUa -3'
miRNA:   3'- cuugUUGGuGGCGGCG--GCGUCGUCGg -5'
11865 3' -58.8 NC_003266.2 + 25590 0.71 0.191964
Target:  5'- aGAAgUAGCCGCCGCCGCCagaccgucguccucgGCggagaaagcaAGCAGCa -3'
miRNA:   3'- -CUU-GUUGGUGGCGGCGG---------------CG----------UCGUCGg -5'
11865 3' -58.8 NC_003266.2 + 14759 0.71 0.189884
Target:  5'- gGGGCGauaauuuuGCUAgCGCCGCagcagugGCGGCGGCCa -3'
miRNA:   3'- -CUUGU--------UGGUgGCGGCGg------CGUCGUCGG- -5'
11865 3' -58.8 NC_003266.2 + 11500 0.71 0.179779
Target:  5'- gGAGCGcggGCUGCCGCUGuCCGagaagcuGGCGGCCa -3'
miRNA:   3'- -CUUGU---UGGUGGCGGC-GGCg------UCGUCGG- -5'
11865 3' -58.8 NC_003266.2 + 10097 0.71 0.179779
Target:  5'- aGAGCGGCCAUCGCUcgGUgGCGGgGGCg -3'
miRNA:   3'- -CUUGUUGGUGGCGG--CGgCGUCgUCGg -5'
11865 3' -58.8 NC_003266.2 + 16965 0.71 0.16875
Target:  5'- uGAACucCCGCUGCCGCCcugguGCGgagaguguaccgccGCGGCCg -3'
miRNA:   3'- -CUUGuuGGUGGCGGCGG-----CGU--------------CGUCGG- -5'
11865 3' -58.8 NC_003266.2 + 10921 0.72 0.160992
Target:  5'- -cACGGCgGCCGCgGCgGUAGUGGCUg -3'
miRNA:   3'- cuUGUUGgUGGCGgCGgCGUCGUCGG- -5'
11865 3' -58.8 NC_003266.2 + 14842 0.72 0.160992
Target:  5'- --uCAGCCuugGCCGCCGCCacuGCuGCGGCg -3'
miRNA:   3'- cuuGUUGG---UGGCGGCGG---CGuCGUCGg -5'
11865 3' -58.8 NC_003266.2 + 10711 0.71 0.169685
Target:  5'- gGGGCAGCCA-CGCCcucguuaGCCGCGGaauuCGGCCg -3'
miRNA:   3'- -CUUGUUGGUgGCGG-------CGGCGUC----GUCGG- -5'
11865 3' -58.8 NC_003266.2 + 17241 0.71 0.169685
Target:  5'- uGAUGGCgCGCCGCCGCCgguggggGUGGCGGCg -3'
miRNA:   3'- cUUGUUG-GUGGCGGCGG-------CGUCGUCGg -5'
11865 3' -58.8 NC_003266.2 + 17484 0.71 0.18477
Target:  5'- aAACGGCCGCgUGCCGUguCGCGG-AGCCa -3'
miRNA:   3'- cUUGUUGGUG-GCGGCG--GCGUCgUCGG- -5'
11865 3' -58.8 NC_003266.2 + 8268 0.72 0.148083
Target:  5'- --uCAACCGCgCGCCGCCGCu---GCCc -3'
miRNA:   3'- cuuGUUGGUG-GCGGCGGCGucguCGG- -5'
11865 3' -58.8 NC_003266.2 + 13363 0.73 0.121557
Target:  5'- uGGCGGCCucgggcACCGCUGCgGCAGCAcCCg -3'
miRNA:   3'- cUUGUUGG------UGGCGGCGgCGUCGUcGG- -5'
11865 3' -58.8 NC_003266.2 + 26016 0.77 0.07024
Target:  5'- -cACuGCCGCCGCCGCCGCuguggauuuucuAGCuGCUg -3'
miRNA:   3'- cuUGuUGGUGGCGGCGGCG------------UCGuCGG- -5'
11865 3' -58.8 NC_003266.2 + 13922 0.77 0.07024
Target:  5'- -uGCAucGCCGCCGCCGCCGCcauuGCCu -3'
miRNA:   3'- cuUGU--UGGUGGCGGCGGCGucguCGG- -5'
11865 3' -58.8 NC_003266.2 + 16150 0.77 0.066245
Target:  5'- -----uUCACCGCCGCCGCGG-GGCCg -3'
miRNA:   3'- cuuguuGGUGGCGGCGGCGUCgUCGG- -5'
11865 3' -58.8 NC_003266.2 + 15941 0.83 0.023427
Target:  5'- gGGACAugcuggcuaugGCCGCUGCCGCCGCcGUGGCCg -3'
miRNA:   3'- -CUUGU-----------UGGUGGCGGCGGCGuCGUCGG- -5'
11865 3' -58.8 NC_003266.2 + 11416 0.66 0.407364
Target:  5'- gGAACAGCUG-CGCCGUCaGCGGUuuGCUg -3'
miRNA:   3'- -CUUGUUGGUgGCGGCGG-CGUCGu-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.