miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11865 3' -58.8 NC_003266.2 + 17750 0.69 0.241705
Target:  5'- aGGCGGCUguugauCUGCCGCUGCA-CGGCCu -3'
miRNA:   3'- cUUGUUGGu-----GGCGGCGGCGUcGUCGG- -5'
11865 3' -58.8 NC_003266.2 + 6218 0.67 0.362083
Target:  5'- -uGCAGCucaaCAUCGCCGCCaaGgAGCGcGCCg -3'
miRNA:   3'- cuUGUUG----GUGGCGGCGG--CgUCGU-CGG- -5'
11865 3' -58.8 NC_003266.2 + 23254 0.69 0.241705
Target:  5'- --cCAGCCAcCCGCCggGCCGCGagAGCCc -3'
miRNA:   3'- cuuGUUGGU-GGCGG--CGGCGUcgUCGG- -5'
11865 3' -58.8 NC_003266.2 + 16150 0.77 0.066245
Target:  5'- -----uUCACCGCCGCCGCGG-GGCCg -3'
miRNA:   3'- cuuguuGGUGGCGGCGGCGUCgUCGG- -5'
11865 3' -58.8 NC_003266.2 + 8530 0.67 0.353456
Target:  5'- ---gAACCugC-CCGCgCGCGGC-GCCg -3'
miRNA:   3'- cuugUUGGugGcGGCG-GCGUCGuCGG- -5'
11865 3' -58.8 NC_003266.2 + 11911 0.67 0.328457
Target:  5'- aAGgGACCGCCGCgGCUuccaagacccgGCGGCugggcuGCCa -3'
miRNA:   3'- cUUgUUGGUGGCGgCGG-----------CGUCGu-----CGG- -5'
11865 3' -58.8 NC_003266.2 + 20174 0.66 0.398027
Target:  5'- aGAGCAugUug-GCCGCCGagaGGUAGUCg -3'
miRNA:   3'- -CUUGUugGuggCGGCGGCg--UCGUCGG- -5'
11865 3' -58.8 NC_003266.2 + 12710 0.66 0.407364
Target:  5'- aGGGC-GCCACCaGCaGCaGCAGCAGgCg -3'
miRNA:   3'- -CUUGuUGGUGG-CGgCGgCGUCGUCgG- -5'
11865 3' -58.8 NC_003266.2 + 15941 0.83 0.023427
Target:  5'- gGGACAugcuggcuaugGCCGCUGCCGCCGCcGUGGCCg -3'
miRNA:   3'- -CUUGU-----------UGGUGGCGGCGGCGuCGUCGG- -5'
11865 3' -58.8 NC_003266.2 + 23118 1.11 0.00015
Target:  5'- gGAACAACCACCGCCGCCGCAGCAGCCg -3'
miRNA:   3'- -CUUGUUGGUGGCGGCGGCGUCGUCGG- -5'
11865 3' -58.8 NC_003266.2 + 26016 0.77 0.07024
Target:  5'- -cACuGCCGCCGCCGCCGCuguggauuuucuAGCuGCUg -3'
miRNA:   3'- cuUGuUGGUGGCGGCGGCG------------UCGuCGG- -5'
11865 3' -58.8 NC_003266.2 + 10921 0.72 0.160992
Target:  5'- -cACGGCgGCCGCgGCgGUAGUGGCUg -3'
miRNA:   3'- cuUGUUGgUGGCGgCGgCGUCGUCGG- -5'
11865 3' -58.8 NC_003266.2 + 13922 0.77 0.07024
Target:  5'- -uGCAucGCCGCCGCCGCCGCcauuGCCu -3'
miRNA:   3'- cuUGU--UGGUGGCGGCGGCGucguCGG- -5'
11865 3' -58.8 NC_003266.2 + 23388 0.74 0.105387
Target:  5'- aGAGCuuAACCGCC-CCGCCGCc-CAGCCc -3'
miRNA:   3'- -CUUG--UUGGUGGcGGCGGCGucGUCGG- -5'
11865 3' -58.8 NC_003266.2 + 15122 0.68 0.297197
Target:  5'- cGAGCAG--GCCGUCuacUCGCAGCAGCUg -3'
miRNA:   3'- -CUUGUUggUGGCGGc--GGCGUCGUCGG- -5'
11865 3' -58.8 NC_003266.2 + 3641 0.68 0.297197
Target:  5'- -uGCcGCCAgCGCCGUgCGCGGaauGGCCa -3'
miRNA:   3'- cuUGuUGGUgGCGGCG-GCGUCg--UCGG- -5'
11865 3' -58.8 NC_003266.2 + 16489 0.68 0.289751
Target:  5'- cAGCAGgUGCUGCCGagCGCGGC-GCCg -3'
miRNA:   3'- cUUGUUgGUGGCGGCg-GCGUCGuCGG- -5'
11865 3' -58.8 NC_003266.2 + 22318 0.68 0.282453
Target:  5'- -cGCAcCCGgCGUCGUgcaCGCAGCAGCg -3'
miRNA:   3'- cuUGUuGGUgGCGGCG---GCGUCGUCGg -5'
11865 3' -58.8 NC_003266.2 + 16965 0.71 0.16875
Target:  5'- uGAACucCCGCUGCCGCCcugguGCGgagaguguaccgccGCGGCCg -3'
miRNA:   3'- -CUUGuuGGUGGCGGCGG-----CGU--------------CGUCGG- -5'
11865 3' -58.8 NC_003266.2 + 10097 0.71 0.179779
Target:  5'- aGAGCGGCCAUCGCUcgGUgGCGGgGGCg -3'
miRNA:   3'- -CUUGUUGGUGGCGG--CGgCGUCgUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.