miRNA display CGI


Results 61 - 80 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11865 3' -58.8 NC_003266.2 + 23052 0.71 0.195121
Target:  5'- uGGGCGGCUGCUGCgGCgGCGGUGGUUg -3'
miRNA:   3'- -CUUGUUGGUGGCGgCGgCGUCGUCGG- -5'
11865 3' -58.8 NC_003266.2 + 14879 0.7 0.211596
Target:  5'- cGGACAAgaaaaaCACCGCCuaCCGCAGCugguaccuGGCCu -3'
miRNA:   3'- -CUUGUUg-----GUGGCGGc-GGCGUCG--------UCGG- -5'
11865 3' -58.8 NC_003266.2 + 30993 0.7 0.211596
Target:  5'- uGGACAuggACgGCCGCgGCuCGgAGCAGCg -3'
miRNA:   3'- -CUUGU---UGgUGGCGgCG-GCgUCGUCGg -5'
11865 3' -58.8 NC_003266.2 + 4739 0.67 0.353456
Target:  5'- ---gGACuUACCGCaGCCGguGgGGCCg -3'
miRNA:   3'- cuugUUG-GUGGCGgCGGCguCgUCGG- -5'
11865 3' -58.8 NC_003266.2 + 11956 0.67 0.34246
Target:  5'- cAACAGCCACCuccugauccccaauGCgggcggCGCUGCAGagcCAGCCg -3'
miRNA:   3'- cUUGUUGGUGG--------------CG------GCGGCGUC---GUCGG- -5'
11865 3' -58.8 NC_003266.2 + 24711 0.67 0.336643
Target:  5'- cGAGCGcACCACCGCCuCgGaccuGGCAGaCCu -3'
miRNA:   3'- -CUUGU-UGGUGGCGGcGgCg---UCGUC-GG- -5'
11865 3' -58.8 NC_003266.2 + 15615 0.67 0.336643
Target:  5'- -cGCAACuaCACCcCCGCCGCcGC-GCCc -3'
miRNA:   3'- cuUGUUG--GUGGcGGCGGCGuCGuCGG- -5'
11865 3' -58.8 NC_003266.2 + 16086 0.67 0.328457
Target:  5'- uGAGau-CUACgGCC-CCGCGGCGGCg -3'
miRNA:   3'- -CUUguuGGUGgCGGcGGCGUCGUCGg -5'
11865 3' -58.8 NC_003266.2 + 11163 0.67 0.32042
Target:  5'- gGAuCAGCC-CUGCgCGCgCGCAcGUGGCCg -3'
miRNA:   3'- -CUuGUUGGuGGCG-GCG-GCGU-CGUCGG- -5'
11865 3' -58.8 NC_003266.2 + 9235 0.67 0.32042
Target:  5'- aGGgGGCCugCGUCGCCGgCGGC-GCa -3'
miRNA:   3'- cUUgUUGGugGCGGCGGC-GUCGuCGg -5'
11865 3' -58.8 NC_003266.2 + 14708 0.67 0.32042
Target:  5'- aGAGCGucGCCgcgucaACCGCaGCCGUAGCcaccGCCu -3'
miRNA:   3'- -CUUGU--UGG------UGGCGgCGGCGUCGu---CGG- -5'
11865 3' -58.8 NC_003266.2 + 1856 0.67 0.32042
Target:  5'- uGGCAgaACCACUGCa---GCAGUAGCCu -3'
miRNA:   3'- cUUGU--UGGUGGCGgcggCGUCGUCGG- -5'
11865 3' -58.8 NC_003266.2 + 15122 0.68 0.297197
Target:  5'- cGAGCAG--GCCGUCuacUCGCAGCAGCUg -3'
miRNA:   3'- -CUUGUUggUGGCGGc--GGCGUCGUCGG- -5'
11865 3' -58.8 NC_003266.2 + 3641 0.68 0.297197
Target:  5'- -uGCcGCCAgCGCCGUgCGCGGaauGGCCa -3'
miRNA:   3'- cuUGuUGGUgGCGGCG-GCGUCg--UCGG- -5'
11865 3' -58.8 NC_003266.2 + 16489 0.68 0.289751
Target:  5'- cAGCAGgUGCUGCCGagCGCGGC-GCCg -3'
miRNA:   3'- cUUGUUgGUGGCGGCg-GCGUCGuCGG- -5'
11865 3' -58.8 NC_003266.2 + 22318 0.68 0.282453
Target:  5'- -cGCAcCCGgCGUCGUgcaCGCAGCAGCg -3'
miRNA:   3'- cuUGUuGGUgGCGGCG---GCGUCGUCGg -5'
11865 3' -58.8 NC_003266.2 + 24906 0.68 0.275301
Target:  5'- cGAguGCCccCCGCCGCUGUGG-AGCCa -3'
miRNA:   3'- cUUguUGGu-GGCGGCGGCGUCgUCGG- -5'
11865 3' -58.8 NC_003266.2 + 12069 0.69 0.254715
Target:  5'- -cGCAACC-CCGaaGCCuuuagaCAGCAGCCc -3'
miRNA:   3'- cuUGUUGGuGGCggCGGc-----GUCGUCGG- -5'
11865 3' -58.8 NC_003266.2 + 31161 0.69 0.237911
Target:  5'- --cCGACCAUCGCCucuccuacgagcucCUGCAGCAGCg -3'
miRNA:   3'- cuuGUUGGUGGCGGc-------------GGCGUCGUCGg -5'
11865 3' -58.8 NC_003266.2 + 15740 0.7 0.223233
Target:  5'- uAGC-ACCACCGCCauGCgUGCGGCgcgAGCCu -3'
miRNA:   3'- cUUGuUGGUGGCGG--CG-GCGUCG---UCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.