miRNA display CGI


Results 21 - 40 of 81 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11865 3' -58.8 NC_003266.2 + 10241 0.67 0.336642
Target:  5'- ----cACCACCGCCGCCgGCAuCA-CCu -3'
miRNA:   3'- cuuguUGGUGGCGGCGG-CGUcGUcGG- -5'
11865 3' -58.8 NC_003266.2 + 16086 0.67 0.328457
Target:  5'- uGAGau-CUACgGCC-CCGCGGCGGCg -3'
miRNA:   3'- -CUUguuGGUGgCGGcGGCGUCGUCGg -5'
11865 3' -58.8 NC_003266.2 + 11911 0.67 0.328457
Target:  5'- aAGgGACCGCCGCgGCUuccaagacccgGCGGCugggcuGCCa -3'
miRNA:   3'- cUUgUUGGUGGCGgCGG-----------CGUCGu-----CGG- -5'
11865 3' -58.8 NC_003266.2 + 11163 0.67 0.32042
Target:  5'- gGAuCAGCC-CUGCgCGCgCGCAcGUGGCCg -3'
miRNA:   3'- -CUuGUUGGuGGCG-GCG-GCGU-CGUCGG- -5'
11865 3' -58.8 NC_003266.2 + 9235 0.67 0.32042
Target:  5'- aGGgGGCCugCGUCGCCGgCGGC-GCa -3'
miRNA:   3'- cUUgUUGGugGCGGCGGC-GUCGuCGg -5'
11865 3' -58.8 NC_003266.2 + 14708 0.67 0.32042
Target:  5'- aGAGCGucGCCgcgucaACCGCaGCCGUAGCcaccGCCu -3'
miRNA:   3'- -CUUGU--UGG------UGGCGgCGGCGUCGu---CGG- -5'
11865 3' -58.8 NC_003266.2 + 1856 0.67 0.32042
Target:  5'- uGGCAgaACCACUGCa---GCAGUAGCCu -3'
miRNA:   3'- cUUGU--UGGUGGCGgcggCGUCGUCGG- -5'
11865 3' -58.8 NC_003266.2 + 7038 0.68 0.31253
Target:  5'- uAACGGCC-UUGuaGgCGCAGCAGCCc -3'
miRNA:   3'- cUUGUUGGuGGCggCgGCGUCGUCGG- -5'
11865 3' -58.8 NC_003266.2 + 18053 0.68 0.31253
Target:  5'- -cACGGCCACCGgCGgCaGgGGCuAGCCa -3'
miRNA:   3'- cuUGUUGGUGGCgGCgG-CgUCG-UCGG- -5'
11865 3' -58.8 NC_003266.2 + 16947 0.68 0.31253
Target:  5'- -uAUAGCCgugguagaAgCGCgUGCCGCGGUAGCCc -3'
miRNA:   3'- cuUGUUGG--------UgGCG-GCGGCGUCGUCGG- -5'
11865 3' -58.8 NC_003266.2 + 3641 0.68 0.297197
Target:  5'- -uGCcGCCAgCGCCGUgCGCGGaauGGCCa -3'
miRNA:   3'- cuUGuUGGUgGCGGCG-GCGUCg--UCGG- -5'
11865 3' -58.8 NC_003266.2 + 15122 0.68 0.297197
Target:  5'- cGAGCAG--GCCGUCuacUCGCAGCAGCUg -3'
miRNA:   3'- -CUUGUUggUGGCGGc--GGCGUCGUCGG- -5'
11865 3' -58.8 NC_003266.2 + 11575 0.68 0.297197
Target:  5'- ---uGAUgGCCGCCaGCUucucggacaGCGGCAGCCc -3'
miRNA:   3'- cuugUUGgUGGCGG-CGG---------CGUCGUCGG- -5'
11865 3' -58.8 NC_003266.2 + 16489 0.68 0.289751
Target:  5'- cAGCAGgUGCUGCCGagCGCGGC-GCCg -3'
miRNA:   3'- cUUGUUgGUGGCGGCg-GCGUCGuCGG- -5'
11865 3' -58.8 NC_003266.2 + 22318 0.68 0.282453
Target:  5'- -cGCAcCCGgCGUCGUgcaCGCAGCAGCg -3'
miRNA:   3'- cuUGUuGGUgGCGGCG---GCGUCGUCGg -5'
11865 3' -58.8 NC_003266.2 + 24906 0.68 0.275301
Target:  5'- cGAguGCCccCCGCCGCUGUGG-AGCCa -3'
miRNA:   3'- cUUguUGGu-GGCGGCGGCGUCgUCGG- -5'
11865 3' -58.8 NC_003266.2 + 12069 0.69 0.254715
Target:  5'- -cGCAACC-CCGaaGCCuuuagaCAGCAGCCc -3'
miRNA:   3'- cuUGUUGGuGGCggCGGc-----GUCGUCGG- -5'
11865 3' -58.8 NC_003266.2 + 15765 0.69 0.24814
Target:  5'- cGGGCGAUgCGCCGCCGCCgGCucuuggcGCGGgCg -3'
miRNA:   3'- -CUUGUUG-GUGGCGGCGG-CGu------CGUCgG- -5'
11865 3' -58.8 NC_003266.2 + 17750 0.69 0.241705
Target:  5'- aGGCGGCUguugauCUGCCGCUGCA-CGGCCu -3'
miRNA:   3'- cUUGUUGGu-----GGCGGCGGCGUcGUCGG- -5'
11865 3' -58.8 NC_003266.2 + 23254 0.69 0.241705
Target:  5'- --cCAGCCAcCCGCCggGCCGCGagAGCCc -3'
miRNA:   3'- cuuGUUGGU-GGCGG--CGGCGUcgUCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.